Gene: Sopen11g025070

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen11g025070
  • Transcript Identifier Sopen11g025070.1
  • Gene Type Coding gene
  • Location Spenn-ch11 : 60457638-60460736 : negative

Gene Family Information

  • ID HOM05D000857
  • #Genes/#Species 696/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen11g025070.1

Descriptions

  • Description RNA-binding (RRM/RBD/RNP motifs) family protein | FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding | INVOLVED IN: biological_process unknown | LOCATED IN: cellular_component unknown | EXPRESSED IN: shoot apex, embryo, leaf whorl, flower, seed | EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait | BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0046872
IEA
InterPrometal ion binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G51520
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT3G51950

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR035979 RNA-binding domain superfamily
IPR000504 RNA recognition motif domain
IPR000571 Zinc finger, CCCH-type
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR034365 AtC3H46-like, RNA recognition motif
IPR036855 Zinc finger, CCCH-type superfamily
Mapman id Description
15.5.16 RNA biosynthesis.transcriptional regulation.transcription factor (C3H-ZF)