Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Sopen01g004120 RNA-binding (RRM/RBD/RNP motifs) family protein | FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding | INVOLVED IN: biological_process unknown | LOCATED IN: cellular_component unknown | EXPRESSED IN: shoot apex, embryo, leaf whorl, flower, seed | EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait | BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein Spenn-ch01 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG3G14800 LG-3 + View
Acer truncatum Atru.chr3.2642 chr3 - View
Actinidia chinensis Actinidia23980 Lachesis_group9 - View
Actinidia chinensis Actinidia16348 Lachesis_group24 + View
Actinidia chinensis Actinidia06927 Lachesis_group13 + View
Actinidia chinensis Actinidia11669 Lachesis_group25 + View
Arabidopsis lyrata AL1G59410 scaffold_1 + View
Arabidopsis lyrata AL6G23260 scaffold_6 - View
Avicennia marina MSTRG.17606 ScioBoG_19834_HRSCAF_19925 + View
Avicennia marina MSTRG.18444 ScioBoG_22153_HRSCAF_22259 + View
Amaranthus hybridus Ah.06g193870 Zinc finger CCCH domain-containing protein 53 (OsC3H53) AmaHy_arrow1_Scaffold_6 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.KYG6ZE PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) arahy.Tifrunner.gnm1.Arahy.13 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.QQ4J84 PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) arahy.Tifrunner.gnm1.Arahy.03 - View
Arabidopsis thaliana AT1G51520 RNA-binding (RRM/RBD/RNP motifs) family protein RNA-binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 9 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G21100.2)%3B Has 257 Blast hits to 190 proteins in 19 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 2%3B Plants - 251%3B Viruses - 0%3B Other Eukaryotes - 4 (source: NCBI BLink). Chr1 + View
Arabidopsis thaliana AT5G12440 CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein CCCH-type zinc fingerfamily protein with RNA-binding domain%3B FUNCTIONS IN: nucleotide binding%2C zinc ion binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C CCCH-type (InterPro:IPR000571)%2C RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G21100.2)%3B Has 264 Blast hits to 227 proteins in 33 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 16%3B Fungi - 2%3B Plants - 228%3B Viruses - 0%3B Other Eukaryotes - 18 (source: NCBI BLink). Chr5 - View
Brassica carinata BcaC08g43318 ChrC08 + View
Brassica carinata BcaB08g37003 ChrB08 - View
Brassica napus A10p25390 A10 + View
Brassica napus C05p42960 C05 - View
Brassica napus C09p64450 C09 + View
Brassica oleracea BolC9t59280H C9 + View
Brassica oleracea BolC6t35779H C6 + View
Brassica rapa BraA06t23451Z A06 - View
Brassica rapa BraA03t09902Z A03 - View
Brassica rapa BraA10t44603Z A10 + View
Beta vulgaris EL10Ac4g10210 PF00642//PF13893 - Zinc finger C-x8-C-x5-C-x3-H type (and similar) (zf-CCCH) // RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_5) Chr4_EL10_PGA_scaffold1 - View
Corylus avellana Haze_23176 Similar to Os03g0328900: Zinc finger CCCH domain-containing protein 22 (Oryza sativa subsp. japonica OX%3D39947) 6 + View
Citrus clementina Ciclev10018237m.g scaffold_2 + View
Cardamine hirsuta CARHR041680 Zinc finger CCCH domain-containing protein Chr1 + View
Cardamine hirsuta CARHR200660 Zinc finger CCCH domain-containing protein 55 Chr6 + View
Carya illinoinensis CiPaw.13G154600 PF00076//PF00642 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Zinc finger C-x8-C-x5-C-x3-H type (and similar) (zf-CCCH) Chr13 - View
Carya illinoinensis CiPaw.14G116500 PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) Chr14 - View
Carica papaya Cpa.g.sc84.22 supercontig_84 + View
Chenopodium quinoa AUR62039862 Os07g0682400: Zinc finger CCCH domain-containing protein 53 C_Quinoa_Scaffold_4462 - View
Chenopodium quinoa AUR62000153 Os07g0682400: Zinc finger CCCH domain-containing protein 53 C_Quinoa_Scaffold_2088 + View
Capsella rubella Carub.0006s1095 scaffold_6 - View
Capsella rubella Carub.0001s4037 PTHR24009:SF3 - RNA RECOGNITION MOTIF-CONTAINING PROTEIN-RELATED scaffold_1 + View
Davidia involucrata Dinv22159 GWHABJS00000003 + View
Davidia involucrata Dinv36232 GWHABJS00000007 - View
Durio zibethinus Duzib170G0229 NW_019167871.1 + View
Durio zibethinus Duzib150G0767 NW_019167882.1 - View
Erigeron canadensis ECA233G0185 Conyza_canadensis_scaffold:1 - View
Eucalyptus grandis Eucgr.J00738 Chr10 - View
Erythranthe guttata Migut.D00629 scaffold_4 + View
Erythranthe guttata Migut.N02345 scaffold_14 + View
Eutrema salsugineum Thhalv10012926m.g PTHR24009:SF3 - RNA RECOGNITION MOTIF-CONTAINING PROTEIN-RELATED scaffold_2 - View
Eutrema salsugineum Thhalv10011419m.g PTHR24009:SF3 - RNA RECOGNITION MOTIF-CONTAINING PROTEIN-RELATED scaffold_7 - View
Fragaria x ananassa FAN21G1063 PF00076//PF00642 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Zinc finger C-x8-C-x5-C-x3-H type (and similar) (zf-CCCH) Fvb3-2 - View
Fragaria x ananassa FAN25G3797 PF00076//PF00642 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Zinc finger C-x8-C-x5-C-x3-H type (and similar) (zf-CCCH) Fvb3-1 + View
Fragaria x ananassa FAN16G2761 PF00642 - Zinc finger C-x8-C-x5-C-x3-H type (and similar) (zf-CCCH) Fvb3-3 - View
Fragaria x ananassa FAN11G2789 PF00076//PF00642 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Zinc finger C-x8-C-x5-C-x3-H type (and similar) (zf-CCCH) Fvb3-4 + View
Fragaria vesca FvH4_3g28410 PF00076//PF00642 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Zinc finger C-x8-C-x5-C-x3-H type (and similar) (zf-CCCH) Fvb3 - View
Gossypium hirsutum Gohir.D09G108600 PF00642//PF13893 - Zinc finger C-x8-C-x5-C-x3-H type (and similar) (zf-CCCH) // RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_5) D09 - View
Gossypium hirsutum Gohir.D07G127000 PF00076//PF00642 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Zinc finger C-x8-C-x5-C-x3-H type (and similar) (zf-CCCH) D07 - View
Gossypium hirsutum Gohir.A09G112000 PF00642//PF13893 - Zinc finger C-x8-C-x5-C-x3-H type (and similar) (zf-CCCH) // RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_5) A09 - View
Gossypium hirsutum Gohir.D13G220700 PF00076//PF00642 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Zinc finger C-x8-C-x5-C-x3-H type (and similar) (zf-CCCH) D13 + View
Gossypium raimondii Gorai.001G137100 Chr01 - View
Gossypium raimondii Gorai.006G126300 Chr06 - View
Gossypium raimondii Gorai.013G251700 Chr13 + View
Helianthus annuus HanXRQChr13g0401401 Probable RNA-binding (RRM/RBD/RNP motifs) family protein HanXRQChr13 + View
Lupinus albus Lalb_Chr01g0001111 Lalb_Chr01 + View
Malus domestica MD11G1189200 RNA-binding (RRM/RBD/RNP motifs) family protein Chr11 - View
Malus domestica MD03G1171700 RNA-binding (RRM/RBD/RNP motifs) family protein Chr03 - View
Manihot esculenta Manes.06G161900 Chromosome06 - View
Manihot esculenta Manes.14G004600 Chromosome14 + View
Olea europaea Oeu025888.3 chr16 + View
Olea europaea Oeu061306.1 scaffold867 - View
Petunia axillaris Peaxi162Scf00004g03412 Zinc finger CCCH domain-containing protein 22 Peaxi162Scf00004 + View
Punica granatum PGR119G1652 NC_045132.1 - View
Prunus persica Prupe.4G255100 PF00076//PF00642 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Zinc finger C-x8-C-x5-C-x3-H type (and similar) (zf-CCCH) Pp04 + View
Populus trichocarpa Potri.009G050600 PF00642//PF14259 - Zinc finger C-x8-C-x5-C-x3-H type (and similar) (zf-CCCH) // RNA recognition motif (a.k.a. RRM, RBD, or RNP domain) (RRM_6) Chr09 - View
Populus trichocarpa Potri.001G255400 PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) Chr01 - View
Quercus lobata QL01p003927 1 - View
Rhododendron simsii Rhsim13G0217500 chr13 - View
Striga asiatica SGA_v2.0_scaffold29G12311 scaffold29 - View
Striga asiatica SGA_v2.0_scaffold8G04568 scaffold8 - View
Salix brachista Sabra16G0156700 GWHAAZH00000016 + View
Salix brachista Sabra09G0037000 GWHAAZH00000009 - View
Simmondsia chinensis Sc09g0000820 GWHAASQ00000009 + View
Sapria himalayana SHI29808 scaffold68_2605431 - View
Solanum lycopersicum Solyc01g008600.4 Zinc finger transcription factor 6 SL4.0ch01 + View
Solanum lycopersicum Solyc11g065320.2 Zinc finger transcription factor 67 SL4.0ch11 - View
Schrenkiella parvula Sp6g31190 PF00642//PF13893 - Zinc finger C-x8-C-x5-C-x3-H type (and similar) (zf-CCCH) // RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_5) ch6-6 + View
Schrenkiella parvula Sp1g38160 PTHR24009//PTHR24009:SF3 - FAMILY NOT NAMED // RNA RECOGNITION MOTIF-CONTAINING PROTEIN-RELATED ch1-2 + View
Solanum tuberosum PGSC0003DMG400010493 Nucleic acid binding protein ST4.03ch01 + View
Solanum tuberosum PGSC0003DMG400029993 Nucleic acid binding protein ST4.03ch11 - View
Selenicereus undatus Hund07467 Scaffold_33676 - View
Selenicereus undatus Hund22002 Scaffold_33680 - View
Theobroma cacao Thecc.09G239500 Zinc finger family protein / RNA recognition motif-containing protein Chromosome_9 + View
Tarenaya hassleriana THA.LOC104816871 zinc finger CCCH domain-containing protein 55-like isoform X1 NW_010965869.1 - View
Tripterygium wilfordii TWI60G1511 NC_052246.1 + View
Tripterygium wilfordii TWI32G0269 NC_052254.1 - View
Vaccinium macrocarpon vmacro04124 Similar to At3g51950: Zinc finger CCCH domain-containing protein 46 (Arabidopsis thaliana OX%3D3702) chr9_Vaccinium_macrocarpon_Stevens_v1 + View
Vitis vinifera GSVIVG01031538001 chr6 - View