Gene: AT3G51950

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G51950
  • Transcript Identifier AT3G51950.1
  • Gene Type Coding gene
  • Location Chr3 : 19278244-19280407 : negative

Gene Family Information

  • ID HOM05D000857
  • #Genes/#Species 696/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G51950.1
  • uniprot Q9SV09

Descriptions

  • Description Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein
  • Computational description Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, zinc ion binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G63450.3); Has 248 Blast hits to 214 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 5; Plants - 227; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008150
ND
Gene Ontologybiological_process
GO:0090305
IEA
GOA Databasenucleic acid phosphodiester bond hydrolysis

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
IDA
GOA DatabasemRNA binding
GO:0003729
HDA
Gene OntologymRNA binding1
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0046872
IEA
InterPrometal ion binding
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0004518
IEA
GOA Databasenuclease activity
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005575
ND
Gene Ontologycellular_component

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000571 Zinc finger, CCCH-type
IPR034365 AtC3H46-like, RNA recognition motif
IPR035979 RNA-binding domain superfamily
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR036855 Zinc finger, CCCH-type superfamily
IPR000504 RNA recognition motif domain
Mapman id Description
15.5.16 RNA biosynthesis.transcriptional regulation.transcription factor (C3H-ZF)