Gene: Sopen11g024210

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen11g024210
  • Transcript Identifier Sopen11g024210.1
  • Gene Type Coding gene
  • Location Spenn-ch11 : 58897681-58909752 : positive

Gene Family Information

  • ID HOM05D000706
  • #Genes/#Species 813/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen11g024210.1

Descriptions

  • Description nucleic acid binding, zinc ion binding, DNA binding | FUNCTIONS IN: DNA binding, zinc ion binding, nucleic acid binding | INVOLVED IN: histone modification, transcription initiation | LOCATED IN: nucleus | EXPRESSED IN: guard cell, cultured cell | CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type , Zinc finger, PHD-type, conserved site , Plus-3 domain, subgroup , Zinc finger, PHD-type , GYF , SWIB/MDM2 domain , Plus-3 , SWIB domain , Zinc finger, FYVE/PHD-type , Zinc finger, PHD-finger | BEST Arabidopsis thaliana protein match is: DNA binding, zinc ion binding, nucleic acid binding, nucleic acid binding
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010964
ISO
PLAZA Integrative Orthologyregulation of heterochromatin assembly by small RNA AT2G16485
GO:0032776
ISO
PLAZA Integrative OrthologyDNA methylation on cytosine AT2G16485

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
InterProDNA binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT2G16485
GO:0042393
ISO
PLAZA Integrative Orthologyhistone binding AT2G16485

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT2G16485
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT2G16485

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR003121 SWIB/MDM2 domain
IPR036885 SWIB/MDM2 domain superfamily
IPR036128 Plus3-like superfamily
IPR001965 Zinc finger, PHD-type
IPR004343 Plus-3 domain
IPR019835 SWIB domain
IPR011011 Zinc finger, FYVE/PHD-type
IPR013083 Zinc finger, RING/FYVE/PHD-type
Mapman id Description
35.1 not assigned.annotated