Gene: Sopen11g020410

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen11g020410
  • Transcript Identifier Sopen11g020410.1
  • Gene Type Coding gene
  • Location Spenn-ch11 : 46778381-46786506 : positive

Gene Family Information

  • ID HOM05D000446
  • #Genes/#Species 1165/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen11g020410.1

Descriptions

  • Description Encodes a bifunctional {beta}-D-xylosidase/{alpha}-L-arabinofuranosidase required for pectic arabinan modification. Located in the extracellular matrix. Gene is expressed specifically in tissues undergoing secondary wall thickening. This is a member of glycosyl hydrolase family 3 and has six other closely related members. | beta-xylosidase 1 (BXL1) | FUNCTIONS IN: alpha-N-arabinofuranosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds | INVOLVED IN: seed coat development | LOCATED IN: apoplast, plant-type cell wall | EXPRESSED IN: 25 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal , Glycoside hydrolase, family 3, C-terminal , Glycoside hydrolase, catalytic core | BEST Arabidopsis thaliana protein match is: beta-xylosidase 2
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005975
IEA
InterProcarbohydrate metabolic process
GO:0045493
IEA
InterProxylan catabolic process
GO:0010214
ISO
PLAZA Integrative Orthologyseed coat development AT5G49360

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004553
IEA
InterProhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0009044
IEA
InterProxylan 1,4-beta-xylosidase activity
GO:0046556
ISO
PLAZA Integrative Orthologyalpha-L-arabinofuranosidase activity AT5G49360

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0048046
ISO
PLAZA Integrative Orthologyapoplast AT5G49360

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily
IPR044993 Beta-D-xylosidase
IPR002772 Glycoside hydrolase family 3 C-terminal domain
IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily
IPR013783 Immunoglobulin-like fold
IPR001764 Glycoside hydrolase, family 3, N-terminal
IPR026891 Fibronectin type III-like domain
IPR017853 Glycoside hydrolase superfamily
Mapman id Description
21.3.2.2.4.2 Cell wall organisation.pectin.rhamnogalacturonan I.modification and degradation.alpha-L-arabinofuranosidase activities.bifunctional alpha-L-arabinofuranosidase and beta-D-xylosidase (BXL)