Gene: Sopen11g006070

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen11g006070
  • Transcript Identifier Sopen11g006070.1
  • Gene Type Coding gene
  • Location Spenn-ch11 : 4406602-4412753 : positive

Gene Family Information

  • ID HOM05D000583
  • #Genes/#Species 954/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen11g006070.1

Descriptions

  • Description Rhamnogalacturonate lyase family protein | FUNCTIONS IN: lyase activity | INVOLVED IN: carbohydrate metabolic process | LOCATED IN: cellular_component unknown | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding , Rhamnogalacturonate lyase , Carbohydrate-binding-like fold , Galactose-binding domain-like | BEST Arabidopsis thaliana protein match is: Rhamnogalacturonate lyase family protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005975
IEA
InterProcarbohydrate metabolic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0030246
IEA
InterProcarbohydrate binding
GO:0003824
IEA
InterProcatalytic activity

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR014718 Glycoside hydrolase-type carbohydrate-binding
IPR029413 Rhamnogalacturonan lyase, domain II
IPR008979 Galactose-binding-like domain superfamily
IPR029411 Rhamnogalacturonan lyase, domain III
IPR010325 Rhamnogalacturonate lyase
IPR011013 Galactose mutarotase-like domain superfamily
IPR013784 Carbohydrate-binding-like fold
Mapman id Description
35.1 not assigned.annotated