Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g005650 Solanum pennellii HOM05D005790 ORTHO05D007464 3.2e-220 768.1 376 100.0
Solyc11g010910.3 Solanum lycopersicum HOM05D005790 ORTHO05D007464 7.8e-219 763.5 376 99.2
PGSC0003DMG400016117 Solanum tuberosum HOM05D005790 ORTHO05D007464 2.6e-214 748.4 376 97.3
Peaxi162Scf00085g00528 Petunia axillaris HOM05D005790 ORTHO05D007464 1.8e-175 619.4 376 81.1
Dinv31817 Davidia involucrata HOM05D005790 ORTHO05D007464 1.2e-155 553.5 391 67.3
CSS0050056 Camellia sinensis var. sinensis HOM05D005790 ORTHO05D007464 7.5e-153 544.3 386 67.9
GSVIVG01009836001 Vitis vinifera HOM05D005790 ORTHO05D007464 1.3e-152 543.5 382 67.0
Cfa013914 Carpinus fangiana HOM05D005790 ORTHO05D007464 3.7e-152 542.0 392 67.1
Actinidia37976 Actinidia chinensis HOM05D005790 ORTHO05D007464 1.6e-150 536.6 390 66.9
Manes.13G125500 Manihot esculenta HOM05D005790 ORTHO05D007464 3.5e-150 535.4 391 66.0
TAR381G1687 Trochodendron aralioides HOM05D005790 ORTHO05D007464 1.7e-149 533.1 406 63.8
Cc10_g02010 Coffea canephora HOM05D005790 ORTHO05D007464 1.9e-148 529.6 379 66.0
Potri.009G002100 Populus trichocarpa HOM05D005790 ORTHO05D007464 5.5e-148 528.1 391 66.2
CiPaw.07G153400 Carya illinoinensis HOM05D005790 ORTHO05D007464 2.8e-147 525.8 391 64.7
CANSAT01G0079 Cannabis sativa HOM05D005790 ORTHO05D007464 8.0e-147 524.2 372 67.5
Aqoxy2G03135 Aquilegia oxysepala HOM05D005790 ORTHO05D007464 1.8e-146 523.1 380 65.8
vmacro21704 Vaccinium macrocarpon HOM05D005790 ORTHO05D007464 1.8e-146 523.1 399 63.2
COL.COLO4_26188 Corchorus olitorius HOM05D005790 ORTHO05D007464 3.0e-146 522.3 392 66.3
PSO675G3524 Papaver somniferum HOM05D005790 ORTHO05D007464 2.6e-145 519.2 379 65.4
ECA247G0379 Erigeron canadensis HOM05D005790 ORTHO05D007464 3.4e-145 518.8 382 63.4
MSTRG.18414 Avicennia marina HOM05D005790 ORTHO05D007464 4.4e-145 518.5 373 64.3
arahy.Tifrunner.gnm1.ann1.BXK9RQ Arachis hypogaea HOM05D005790 ORTHO05D007464 8.3e-144 514.2 373 66.0
Prupe.1G369900 Prunus persica HOM05D005790 ORTHO05D007464 8.3e-144 514.2 391 63.7
PSO541G0736 Papaver somniferum HOM05D005790 ORTHO05D007464 1.1e-143 513.8 373 65.4
Glyma.06G026400 Glycine max HOM05D005790 ORTHO05D007464 1.4e-143 513.5 385 64.4
Lj1g0012079 Lotus japonicus HOM05D005790 ORTHO05D007464 1.8e-143 513.1 386 64.2
Gohir.A06G005800 Gossypium hirsutum HOM05D005790 ORTHO05D007464 4.1e-143 511.9 386 65.0
arahy.Tifrunner.gnm1.ann1.S6ZM1I Arachis hypogaea HOM05D005790 ORTHO05D007464 1.6e-142 510.0 373 65.7
Gorai.010G006000 Gossypium raimondii HOM05D005790 ORTHO05D007464 4.6e-142 508.4 386 64.8
PGR031G1208 Punica granatum HOM05D005790 ORTHO05D007464 5.9e-142 508.1 388 63.7
FvH4_2g39120 Fragaria vesca HOM05D005790 ORTHO05D007464 1.3e-141 506.9 388 64.4
Medtr3g113190 Medicago truncatula HOM05D005790 ORTHO05D007464 1.3e-141 506.9 386 63.2
AUR62014415 Chenopodium quinoa HOM05D005790 ORTHO05D007464 1.7e-141 506.5 404 60.1
Ca_02056_v3 Cicer arietinum L. HOM05D005790 ORTHO05D007464 1.7e-141 506.5 383 63.2
AUR62019151 Chenopodium quinoa HOM05D005790 ORTHO05D007464 2.3e-141 506.1 381 63.3
RcHm_v2.0_Chr6g0272131 Rosa chinensis HOM05D005790 ORTHO05D007464 2.9e-141 505.8 392 64.0
Gohir.D06G001600 Gossypium hirsutum HOM05D005790 ORTHO05D007464 5.0e-141 505.0 386 64.0
Ciclev10008674m.g Citrus clementina HOM05D005790 ORTHO05D007464 6.6e-141 504.6 377 66.6
Sed0009865 Sechium edule HOM05D005790 ORTHO05D007464 1.5e-140 503.4 380 62.6
TWI36G0257 Tripterygium wilfordii HOM05D005790 ORTHO05D007464 1.9e-140 503.1 407 60.2
Lsat_1_v5_gn_1_16241 Lactuca sativa HOM05D005790 ORTHO05D007464 7.3e-140 501.1 384 61.5
MD15G1016100 Malus domestica HOM05D005790 ORTHO05D007464 9.5e-140 500.7 389 63.5
CsaV3_1G045470 Cucumis sativus L. HOM05D005790 ORTHO05D007464 6.1e-139 498.0 384 63.8
VMungo1309G1814 Vigna mungo HOM05D005790 ORTHO05D007464 6.1e-139 498.0 385 63.6
EL10Ac1g00445 Beta vulgaris HOM05D005790 ORTHO05D007464 1.8e-138 496.5 381 62.7
FAN20G0385 Fragaria x ananassa HOM05D005790 ORTHO05D007464 1.8e-138 496.5 393 63.1
QL02p010842 Quercus lobata HOM05D005790 ORTHO05D007464 4.0e-138 495.4 455 56.7
DCAR_017500 Daucus carota HOM05D005790 ORTHO05D007464 1.2e-137 493.8 384 63.3
Phvul.009G014700 Phaseolus vulgaris HOM05D005790 ORTHO05D007464 1.2e-137 493.8 385 62.9
MELO3C024652.2 Cucumis melo HOM05D005790 ORTHO05D007464 2.0e-137 493.0 385 62.3
Lalb_Chr08g0246071 Lupinus albus HOM05D005790 ORTHO05D007464 7.5e-137 491.1 380 62.1
ClCG05G018560 Citrullus lanatus HOM05D005790 ORTHO05D007464 1.7e-136 490.0 413 59.3
BraA01t00778Z Brassica rapa HOM05D005790 ORTHO05D007464 4.9e-136 488.4 384 60.4
CARHR237760 Cardamine hirsuta HOM05D005790 ORTHO05D007464 8.3e-136 487.6 389 60.4
Sp7g27670 Schrenkiella parvula HOM05D005790 ORTHO05D007464 8.3e-136 487.6 382 59.7
AT4G29860 Arabidopsis thaliana HOM05D005790 ORTHO05D007464 1.1e-135 487.3 387 60.7
Eucgr.J01034 Eucalyptus grandis HOM05D005790 ORTHO05D007464 1.1e-135 487.3 384 62.0
Thhalv10025433m.g Eutrema salsugineum HOM05D005790 ORTHO05D007464 1.4e-135 486.9 383 60.1
AL7G22390 Arabidopsis lyrata HOM05D005790 ORTHO05D007464 1.9e-135 486.5 387 61.0
CSS0048998 Camellia sinensis var. sinensis HOM05D005790 ORTHO05D007464 1.9e-135 486.5 358 66.2
Rhsim06G0026000 Rhododendron simsii HOM05D005790 ORTHO05D007464 3.2e-135 485.7 471 53.5
Sc02g0005160 Simmondsia chinensis HOM05D005790 ORTHO05D007464 3.2e-135 485.7 381 60.1
FAN15G2431 Fragaria x ananassa HOM05D005790 ORTHO05D007464 1.6e-134 483.4 427 58.3
MD08G1017100 Malus domestica HOM05D005790 ORTHO05D007464 2.7e-134 482.6 413 58.1
C01p09340 Brassica napus HOM05D005790 ORTHO05D007464 6.0e-134 481.5 390 60.3
BolC1t00922H Brassica oleracea HOM05D005790 ORTHO05D007464 6.0e-134 481.5 390 60.3
FAN20G1847 Fragaria x ananassa HOM05D005790 ORTHO05D007464 7.8e-134 481.1 422 58.8
A01p08300 Brassica napus HOM05D005790 ORTHO05D007464 8.6e-133 477.6 386 60.4
Carub.0004s1477 Capsella rubella HOM05D005790 ORTHO05D007464 1.5e-132 476.9 382 59.7
HanXRQChr02g0043921 Helianthus annuus HOM05D005790 ORTHO05D007464 8.9e-130 467.6 360 62.2
Nn5g29250 Nelumbo nucifera HOM05D005790 ORTHO05D007464 1.7e-128 463.4 369 61.0
Haze_22599 Corylus avellana HOM05D005790 ORTHO05D007464 1.4e-127 460.3 499 49.3
ATR0945G002 Amborella trichopoda HOM05D005790 ORTHO05D007464 2.4e-127 459.5 400 57.2
Duzib093G0196 Durio zibethinus HOM05D005790 ORTHO05D007464 9.2e-127 457.6 353 65.2
SGA_v2.0_scaffold8G04609 Striga asiatica HOM05D005790 ORTHO05D007464 1.2e-126 457.2 376 59.0
Migut.D00577 Erythranthe guttata HOM05D005790 ORTHO05D007464 6.6e-125 451.4 376 59.3
Os06g0131100 Oryza sativa ssp. japonica HOM05D005790 ORTHO05D007464 2.1e-123 446.4 377 57.0
unitig_26.g10135 Utricularia gibba HOM05D005790 ORTHO05D007464 8.9e-122 441.0 373 55.2
SHI02412 Sapria himalayana HOM05D005790 ORTHO05D007464 2.0e-121 439.9 387 56.8
Thecc.08G038500 Theobroma cacao HOM05D005790 ORTHO05D007464 2.0e-121 439.9 387 57.9
Zm00001eb378230 Zea mays HOM05D005790 ORTHO05D007464 4.4e-121 438.7 380 54.7
THA.LOC104811397 Tarenaya hassleriana HOM05D005790 ORTHO05D007464 1.1e-119 434.1 390 56.2
Atru.BG.234.p Acer truncatum HOM05D005790 ORTHO05D007464 1.2e-115 420.6 373 58.4
Lj4A790T66 Lonicera japonica HOM05D005790 ORTHO05D007464 3.4e-113 412.5 295 66.8
CsaV3_UNG233270 Cucumis sativus L. HOM05D005790 ORTHO05D007464 5.4e-111 405.2 370 55.4
Nitab4.5_0000402g0120 Nicotiana tabacum HOM05D005790 ORTHO05D007464 8.7e-109 397.9 227 85.0
Sabra09G0000400 Salix brachista HOM05D005790 ORTHO05D007464 1.9e-108 396.7 500 44.8
Ah.05g171860 Amaranthus hybridus HOM05D005790 ORTHO05D007464 6.9e-98 361.7 321 54.2
FAN27G0896 Fragaria x ananassa HOM05D005790 ORTHO05D007464 3.9e-93 345.9 416 47.1
Aqoxy4G01228 Aquilegia oxysepala HOM05D005790 ORTHO05D007464 5.1e-93 345.5 270 62.2
Mapoly0014s0217 Marchantia polymorpha HOM05D005790 ORTHO05D007464 6.7e-93 345.1 374 46.5
SMO147G0253 Selaginella moellendorffii HOM05D005790 ORTHO05D007464 3.3e-92 342.8 379 47.5
Atru.chr13.345 Acer truncatum HOM05D005790 ORTHO05D007464 2.0e-89 333.6 218 71.6
Pp3c20_12860 Physcomitrium patens HOM05D005790 ORTHO05D007464 5.3e-82 308.9 372 44.4
SalBow1G3128 Salvia bowleyana HOM05D005790 ORTHO05D007464 2.2e-80 303.5 216 67.6
Aa31LG4G5850 Aethionema arabicum HOM05D005790 ORTHO05D007464 1.1e-79 301.2 295 52.9
Oeu061776.2 Olea europaea HOM05D005790 ORTHO05D000708 1.0e-77 294.7 353 45.3
TPR.G30295 Trifolium pratense HOM05D005790 ORTHO05D007464 5.1e-77 292.4 170 77.1
CDE05G1328 Ceratophyllum demersum HOM05D005790 ORTHO05D007464 5.1e-69 265.8 168 69.6
Actinidia29793 Actinidia chinensis HOM05D005790 ORTHO05D007464 5.7e-68 262.3 409 42.5
Hund17229 Selenicereus undatus HOM05D005790 ORTHO05D007464 4.5e-65 252.7 153 74.5
Psat5g014800 Pisum sativum HOM05D005790 ORTHO05D007464 5.9e-65 252.3 229 55.5
Psat5g014760 Pisum sativum HOM05D005790 ORTHO05D007464 7.9e-62 241.9 139 76.3
Nitab4.5_0000402g0130 Nicotiana tabacum HOM05D005790 ORTHO05D007464 2.6e-60 236.9 121 93.4
RcHm_v2.0_Chr6g0302231 Rosa chinensis HOM05D005790 ORTHO05D007464 3.5e-57 226.5 243 51.0
CBR_g7976 Chara braunii HOM05D001993 ORTHO05D004040 2.7e-54 216.9 561 29.1
MBI09_g08426_MAGBIO Magnolia biondii HOM05D005790 ORTHO05D007464 2.6e-52 210.3 377 38.5
Cpa.g.sc140.27 Carica papaya HOM05D005790 ORTHO05D007464 2.4e-50 203.8 167 58.1
RcHm_v2.0_Chr4g0408871 Rosa chinensis HOM05D005790 ORTHO05D007464 3.1e-50 203.4 373 37.3
CBR_g24442 Chara braunii HOM05D005790 ORTHO05D007464 2.9e-48 196.8 250 43.2
Gorai.010G006300 Gossypium raimondii HOM05D005790 ORTHO05D007464 3.2e-47 193.4 113 75.2
TWI36G0035 Tripterygium wilfordii HOM05D005790 ORTHO05D007464 9.4e-47 191.8 139 64.7
AagrBONN_evm.TU.Sc2ySwM_369.164 Anthoceros agrestis HOM05D005790 ORTHO05D007464 6.1e-46 189.1 272 39.3
TPR.G30287 Trifolium pratense HOM05D005790 ORTHO05D007464 7.5e-44 182.2 126 65.1
SEGI_31412 Sequoiadendron giganteum HOM05D005790 ORTHO05D007464 3.5e-41 173.3 251 40.2
Cre02.g076850 Chlamydomonas reinhardtii HOM05D005790 ORTHO05D007464 1.9e-39 167.5 438 30.6
Aa31LG4G5860 Aethionema arabicum HOM05D005790 ORTHO05D007464 2.7e-38 163.7 99 71.7
RcHm_v2.0_Chr6g0302371 Rosa chinensis HOM05D005790 ORTHO05D007464 3.0e-37 160.2 180 49.4
Lj4C790T17 Lonicera japonica HOM05D005790 ORTHO05D007464 4.7e-30 136.3 79 73.4
HPP92_020941 Vanilla planifolia HOM05D005790 ORTHO05D007464 8.3e-27 125.6 128 48.4
Cfa025606 Carpinus fangiana HOM05D005790 ORTHO05D007464 1.4e-26 124.8 363 30.0
PRCOL_00000381 Prasinoderma coloniale HOM05D005790 ORTHO05D007832 4.1e-26 123.2 414 28.7
MCO14G170 Micromonas commoda HOM05D005790 ORTHO05D007464 7.8e-25 119.0 446 26.0
MD15G1017900 Malus domestica HOM05D005790 ORTHO05D007464 2.6e-20 104.0 220 35.0
MD15G1018000 Malus domestica HOM05D005790 ORTHO05D007464 2.6e-20 104.0 220 35.0
RcHm_v2.0_Chr6g0302301 Rosa chinensis HOM05D005790 ORTHO05D007464 7.5e-20 102.4 58 72.4
TAR625G0591 Trochodendron aralioides HOM05D000460 ORTHO05D000333 1.0e-16 92.0 182 37.4
Cpa.g.sc140.30 Carica papaya HOM05D005790 ORTHO05D007464 2.3e-16 90.9 54 75.9
SEGI_12232 Sequoiadendron giganteum HOM05D005790 ORTHO05D007464 2.3e-16 90.9 69 56.5
HPP92_020940 Vanilla planifolia HOM05D005790 ORTHO05D007464 1.1e-15 88.6 55 72.7
Hma1.2p1_1776F.1_g301940 Hydrangea macrophylla HOM05D005790 ORTHO05D007464 2.4e-10 70.9 52 61.5
Mapoly0143s0027 Marchantia polymorpha HOM05D002561 ORTHO05D006466 7.8e-09 65.9 371 23.7
CDE05G1505 Ceratophyllum demersum HOM05D005790 ORTHO05D007464 1.7e-08 64.7 50 60.0
Rhsim05G0228200 Rhododendron simsii HOM05D002560 ORTHO05D003782 1.9e-07 61.2 354 22.0
Cfa014656 Carpinus fangiana HOM05D002561 ORTHO05D006466 3.3e-07 60.5 368 23.6
COL.COLO4_38433 Corchorus olitorius HOM05D005790 ORTHO05D030850 5.6e-07 59.7 28 78.6
Actinidia08754 Actinidia chinensis HOM05D004758 ORTHO05D006063 2.1e-06 57.8 364 24.5
MCO07G246 Micromonas commoda HOM05D002560 ORTHO05D003782 2.1e-06 57.8 373 19.8
RhsimUnG0148700 Rhododendron simsii HOM05D000113 ORTHO05D002571 2.1e-06 57.8 32 81.2
FAN04G0823 Fragaria x ananassa HOM05D000997 ORTHO05D000828 3.6e-06 57.0 196 25.0
VMungo0331G1008 Vigna mungo HOM05D005790 ORTHO05D007464 3.6e-06 57.0 73 42.5
FAN13G1962 Fragaria x ananassa HOM05D000997 ORTHO05D000828 6.2e-06 56.2 196 24.0
RcHm_v2.0_Chr7g0239801 Rosa chinensis HOM05D000997 ORTHO05D000828 8.1e-06 55.8 196 24.5


User provided reference genes

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