Gene: Sopen11g004100

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen11g004100
  • Transcript Identifier Sopen11g004100.1
  • Gene Type Coding gene
  • Location Spenn-ch11 : 2570848-2571669 : positive

Gene Family Information

  • ID HOM05D003377
  • #Genes/#Species 203/89
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen11g004100.1

Descriptions

  • Description RNA recognition motif and CCHC-type zinc finger domains containing protein | FUNCTIONS IN: RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding | INVOLVED IN: biological_process unknown | LOCATED IN: cellular_component unknown | EXPRESSED IN: 16 plant structures | EXPRESSED DURING: 7 growth stages | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Ribonucleoprotein, BRUNO-like , Nucleotide-binding, alpha-beta plait , Zinc finger, CCHC-type | BEST Arabidopsis thaliana protein match is: ortholog of human splicing factor SC35
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
IEA
InterPromRNA splicing, via spliceosome
GO:0051302
ISO
PLAZA Integrative Orthologyregulation of cell division AT3G10400
GO:0032502
ISO
PLAZA Integrative Orthologydevelopmental process AT3G10400

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0008270
IEA
InterProzinc ion binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005689
IEA
InterProU12-type spliceosomal complex
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT3G10400

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000504 RNA recognition motif domain
IPR044598 Zinc finger CCHC-type and RNA-binding motif-containing protein 1
IPR036875 Zinc finger, CCHC-type superfamily
IPR034219 ZCRB1, RNA recognition motif
IPR035979 RNA-binding domain superfamily
IPR001878 Zinc finger, CCHC-type
IPR003954 RNA recognition motif domain, eukaryote
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
Mapman id Description
16.2.4.2.3 RNA processing.pre-mRNA splicing.U12-type-intron-specific minor spliceosome.U11/U12 small nuclear ribonucleoprotein particle (snRNP).RNA chaperone (U11/U12-31K)