Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g001760 Solanum pennellii HOM05D005401 ORTHO05D006582 4.0e-238 827.8 449 100.0
Solyc11g005800.2 Solanum lycopersicum HOM05D005401 ORTHO05D006582 2.5e-235 818.5 449 98.9
PGSC0003DMG400028676 Solanum tuberosum HOM05D005401 ORTHO05D006582 3.8e-228 794.7 455 95.6
Nitab4.5_0000805g0050 Nicotiana tabacum HOM05D005401 ORTHO05D006582 1.2e-200 703.4 449 86.6
Peaxi162Scf00012g01522 Petunia axillaris HOM05D005401 ORTHO05D006582 3.3e-179 632.1 479 76.0
Nitab4.5_0000877g0070 Nicotiana tabacum HOM05D005401 ORTHO05D006582 6.4e-175 617.8 449 72.2
Dinv03731 Davidia involucrata HOM05D005401 ORTHO05D006582 3.9e-172 608.6 456 75.4
GSVIVG01026512001 Vitis vinifera HOM05D005401 ORTHO05D006582 2.5e-163 579.3 455 71.9
Oeu024886.1 Olea europaea HOM05D005401 ORTHO05D006582 3.3e-163 578.9 460 70.7
Rhsim10G0136100 Rhododendron simsii HOM05D005401 ORTHO05D006582 7.3e-163 577.8 454 71.4
Actinidia06639 Actinidia chinensis HOM05D005401 ORTHO05D006582 6.2e-162 574.7 454 69.8
Hma1.2p1_0528F.1_g173030 Hydrangea macrophylla HOM05D005401 ORTHO05D006582 3.1e-161 572.4 459 71.0
Dinv24333 Davidia involucrata HOM05D005401 ORTHO05D006582 4.0e-161 572.0 460 66.1
HanXRQChr04g0116521 Helianthus annuus HOM05D005401 ORTHO05D006582 5.2e-161 571.6 468 69.4
MSTRG.23445 Avicennia marina HOM05D005401 ORTHO05D006582 1.2e-160 570.5 462 63.6
Lsat_1_v5_gn_7_27421 Lactuca sativa HOM05D005401 ORTHO05D006582 1.5e-160 570.1 480 64.6
Nn1g06207 Nelumbo nucifera HOM05D005401 ORTHO05D006582 5.8e-160 568.2 464 69.4
CANSAT01G1454 Cannabis sativa HOM05D005401 ORTHO05D006582 9.9e-160 567.4 454 63.4
Haze_25113 Corylus avellana HOM05D005401 ORTHO05D006582 9.9e-160 567.4 452 71.9
CiPaw.03G129100 Carya illinoinensis HOM05D005401 ORTHO05D006582 4.9e-159 565.1 452 70.1
Migut.H00736 Erythranthe guttata HOM05D005401 ORTHO05D006582 9.2e-158 560.8 466 60.7
Manes.13G082700 Manihot esculenta HOM05D005401 ORTHO05D006582 2.1e-157 559.7 455 70.1
TWI79G0453 Tripterygium wilfordii HOM05D005401 ORTHO05D006582 3.5e-157 558.9 453 69.3
Cc07_g18120 Coffea canephora HOM05D005401 ORTHO05D006582 4.6e-157 558.5 451 61.6
Sc16g0003880 Simmondsia chinensis HOM05D005401 ORTHO05D006582 4.6e-157 558.5 453 69.8
QL06p029214 Quercus lobata HOM05D005401 ORTHO05D006582 6.0e-157 558.1 431 73.1
DCAR_001363 Daucus carota HOM05D005401 ORTHO05D006582 7.8e-157 557.8 484 66.7
Prupe.6G159400 Prunus persica HOM05D005401 ORTHO05D006582 1.3e-156 557.0 427 72.4
TAR628G0360 Trochodendron aralioides HOM05D005401 ORTHO05D006582 1.3e-156 557.0 466 64.2
Gohir.D11G230200 Gossypium hirsutum HOM05D005401 ORTHO05D006582 3.9e-156 555.4 451 64.7
Thecc.01G128200 Theobroma cacao HOM05D005401 ORTHO05D006582 5.1e-156 555.1 452 69.2
Duzib147G0934 Durio zibethinus HOM05D005401 ORTHO05D006582 6.6e-156 554.7 454 68.7
ECA236G1881 Erigeron canadensis HOM05D005401 ORTHO05D006582 1.1e-155 553.9 457 68.5
AUR62003599 Chenopodium quinoa HOM05D005401 ORTHO05D006582 2.5e-155 552.7 460 67.0
Ciclev10000834m.g Citrus clementina HOM05D005401 ORTHO05D006582 2.5e-155 552.7 432 65.0
Gohir.A11G221000 Gossypium hirsutum HOM05D005401 ORTHO05D006582 1.6e-154 550.1 451 69.2
vmacro12864 Vaccinium macrocarpon HOM05D005401 ORTHO05D006582 3.6e-154 548.9 475 60.6
Gohir.A11G226902 Gossypium hirsutum HOM05D005401 ORTHO05D006582 6.2e-154 548.1 452 62.2
Potri.007G108200 Populus trichocarpa HOM05D005401 ORTHO05D006582 1.4e-153 547.0 454 63.0
Gorai.003G067300 Gossypium raimondii HOM05D005401 ORTHO05D006582 1.8e-153 546.6 452 62.2
RhsimUnG0132800 Rhododendron simsii HOM05D005401 ORTHO05D006582 6.8e-153 544.7 529 55.4
Cfa002819 Carpinus fangiana HOM05D005401 ORTHO05D006582 2.2e-151 539.7 451 69.6
Lj4A848G70 Lonicera japonica HOM05D005401 ORTHO05D006582 2.9e-151 539.3 508 57.5
MD01G1002400 Malus domestica HOM05D005401 ORTHO05D006582 3.8e-151 538.9 393 75.8
AUR62017910 Chenopodium quinoa HOM05D005401 ORTHO05D006582 1.9e-150 536.6 476 58.2
CSS0027531 Camellia sinensis var. sinensis HOM05D005401 ORTHO05D006582 3.2e-150 535.8 501 57.5
Eucgr.H04948 Eucalyptus grandis HOM05D005401 ORTHO05D006582 3.2e-150 535.8 462 66.2
CsaV3_6G041720 Cucumis sativus L. HOM05D005401 ORTHO05D006582 4.2e-150 535.4 480 65.6
Sed0020894 Sechium edule HOM05D005401 ORTHO05D006582 9.2e-150 534.3 482 63.5
Ah.02g121770 Amaranthus hybridus HOM05D005401 ORTHO05D006582 1.2e-149 533.9 453 66.2
THA.LOC104799501 Tarenaya hassleriana HOM05D005401 ORTHO05D006582 2.1e-149 533.1 468 58.3
PSO170G5022 Papaver somniferum HOM05D005401 ORTHO05D006582 4.6e-149 531.9 458 60.0
AT5G64630 Arabidopsis thaliana HOM05D005401 ORTHO05D006582 3.0e-148 529.3 487 59.3
AL8G42040 Arabidopsis lyrata HOM05D005401 ORTHO05D006582 3.9e-148 528.9 487 57.3
PGR102G1978 Punica granatum HOM05D005401 ORTHO05D006582 6.6e-148 528.1 467 64.9
Carub.0008s2542 Capsella rubella HOM05D005401 ORTHO05D006582 1.5e-147 526.9 472 59.1
BraA06t26078Z Brassica rapa HOM05D005401 ORTHO05D006582 1.9e-147 526.6 483 62.9
COL.COLO4_14025 Corchorus olitorius HOM05D005401 ORTHO05D006582 4.3e-147 525.4 487 62.8
BcaB02g09807 Brassica carinata HOM05D005401 ORTHO05D006582 5.6e-147 525.0 484 56.4
PSO017G4890 Papaver somniferum HOM05D005401 ORTHO05D006582 1.1e-145 520.8 466 59.0
BcaC01g02694 Brassica carinata HOM05D005401 ORTHO05D006582 3.1e-145 519.2 488 55.7
C03p61560 Brassica napus HOM05D005401 ORTHO05D006582 3.1e-145 519.2 488 55.7
BolC3t18416H Brassica oleracea HOM05D005401 ORTHO05D006582 2.6e-144 516.2 495 55.2
Aa31LG1G17320 Aethionema arabicum HOM05D005401 ORTHO05D006582 1.4e-142 510.4 427 60.0
Atru.chr4.842 Acer truncatum HOM05D005401 ORTHO05D006582 3.2e-142 509.2 424 61.8
EL10Ac7g17633 Beta vulgaris HOM05D005401 ORTHO05D006582 7.1e-142 508.1 470 63.4
Aqoxy5G02178 Aquilegia oxysepala HOM05D005401 ORTHO05D006582 6.0e-141 505.0 494 59.9
Psat7g046640 Pisum sativum HOM05D005401 ORTHO05D006582 3.9e-140 502.3 399 61.2
Glyma.05G190800 Glycine max HOM05D005401 ORTHO05D006582 1.9e-139 500.0 428 58.2
HPP92_001192 Vanilla planifolia HOM05D005401 ORTHO05D006582 7.3e-139 498.0 456 56.8
Ca_17644_v3 Cicer arietinum L. HOM05D005401 ORTHO05D006582 2.1e-138 496.5 423 58.6
Glyma.08G156200 Glycine max HOM05D005401 ORTHO05D006582 1.4e-137 493.8 420 59.0
Lalb_Chr12g0203191 Lupinus albus HOM05D005401 ORTHO05D006582 9.9e-136 487.6 400 61.0
Sp2g27690 Schrenkiella parvula HOM05D005401 ORTHO05D006582 1.4e-134 483.8 482 58.7
Lalb_Chr13g0296571 Lupinus albus HOM05D005401 ORTHO05D006582 4.2e-134 482.3 426 57.3
ClCG01G015480 Citrullus lanatus HOM05D005401 ORTHO05D006582 5.4e-134 481.9 484 60.3
VMungo0251G3661 Vigna mungo HOM05D005401 ORTHO05D006582 3.5e-133 479.2 421 57.5
CARHR278600 Cardamine hirsuta HOM05D005401 ORTHO05D006582 7.9e-133 478.0 487 58.9
Os08g0108200 Oryza sativa ssp. japonica HOM05D005401 ORTHO05D006582 2.3e-132 476.5 437 56.5
ATR1136G147 Amborella trichopoda HOM05D005401 ORTHO05D006582 6.7e-132 474.9 471 55.6
Thhalv10004101m.g Eutrema salsugineum HOM05D005401 ORTHO05D006582 1.9e-131 473.4 483 52.8
Phvul.002G271200 Phaseolus vulgaris HOM05D005401 ORTHO05D006582 3.3e-131 472.6 410 57.6
MBI06_g43013_MAGBIO Magnolia biondii HOM05D005401 ORTHO05D006582 2.8e-130 469.5 474 55.5
EL10Ac6g15280 Beta vulgaris HOM05D005401 ORTHO05D006582 1.5e-128 463.8 464 54.3
CDE02G0389 Ceratophyllum demersum HOM05D005401 ORTHO05D006582 1.5e-128 463.8 455 60.9
Lalb_Chr00c34g0408611 Lupinus albus HOM05D005401 ORTHO05D006582 1.3e-127 460.7 400 59.2
FAN23G2510 Fragaria x ananassa HOM05D005401 ORTHO05D006582 1.1e-126 457.6 398 59.5
Medtr8g093540 Medicago truncatula HOM05D005401 ORTHO05D006582 9.3e-126 454.5 399 55.9
Zm00001eb260310 Zea mays HOM05D005401 ORTHO05D006582 1.6e-125 453.8 448 53.1
RcHm_v2.0_Chr2g0120381 Rosa chinensis HOM05D005401 ORTHO05D006582 1.0e-124 451.1 399 66.7
MELO3C008048.2 Cucumis melo HOM05D005401 ORTHO05D006582 8.7e-124 448.0 329 76.0
FvH4_1g24150 Fragaria vesca HOM05D005401 ORTHO05D006582 1.6e-122 443.7 398 65.3
Hund08501 Selenicereus undatus HOM05D005401 ORTHO05D006582 1.1e-121 441.0 453 59.6
A06p31360 Brassica napus HOM05D005401 ORTHO05D006582 1.5e-120 437.2 487 49.1
Lj4g0023934 Lotus japonicus HOM05D005401 ORTHO05D006582 7.6e-120 434.9 429 52.7
HPP92_001165 Vanilla planifolia HOM05D005401 ORTHO05D006582 4.9e-119 432.2 373 59.0
SHI11477 Sapria himalayana HOM05D005401 ORTHO05D006582 7.9e-117 424.9 467 55.5
arahy.Tifrunner.gnm1.ann1.LMDE4E Arachis hypogaea HOM05D005401 ORTHO05D006582 3.9e-116 422.5 420 52.6
arahy.Tifrunner.gnm1.ann1.N6RYVU Arachis hypogaea HOM05D005401 ORTHO05D006582 3.9e-116 422.5 421 52.5
SGA_v2.0_scaffold355G49767 Striga asiatica HOM05D005401 ORTHO05D006582 4.3e-115 419.1 456 58.1
unitig_899.g14701 Utricularia gibba HOM05D005401 ORTHO05D006582 2.7e-109 399.8 452 50.0
FAN26G1589 Fragaria x ananassa HOM05D005401 ORTHO05D006582 3.6e-109 399.4 398 61.6
FAN28G1662 Fragaria x ananassa HOM05D005401 ORTHO05D006582 3.0e-108 396.4 398 61.3
FAN19G2420 Fragaria x ananassa HOM05D005401 ORTHO05D006582 5.9e-104 382.1 398 59.5
Sabra07G0088600 Salix brachista HOM05D005401 ORTHO05D006582 4.7e-101 372.5 395 54.2
AagrBONN_evm.TU.Sc2ySwM_117.3371 Anthoceros agrestis HOM05D005401 ORTHO05D006582 5.3e-97 359.0 461 50.8
AUR62043710 Chenopodium quinoa HOM05D005401 ORTHO05D006582 5.3e-97 359.0 387 52.2
Mapoly0080s0001 Marchantia polymorpha HOM05D005401 ORTHO05D006582 7.7e-96 355.1 405 47.7
TPR.G37327 Trifolium pratense HOM05D005401 ORTHO05D006582 4.2e-94 349.4 282 61.7
CBR_g20440 Chara braunii HOM05D005401 ORTHO05D006582 7.7e-80 302.0 397 43.6
SEGI_26195 Sequoiadendron giganteum HOM05D005401 ORTHO05D006582 8.6e-71 271.9 250 66.8
HanXRQChr04g0116511 Helianthus annuus HOM05D005401 ORTHO05D006582 9.8e-67 258.5 298 47.7
Pp3c1_14660 Physcomitrium patens HOM05D005401 ORTHO05D006582 5.4e-65 252.7 469 42.9
Pp3c1_14663 Physcomitrium patens HOM05D005401 ORTHO05D006582 5.4e-65 252.7 469 42.9
Cc06_g17340 Coffea canephora HOM05D005401 ORTHO05D006582 1.3e-63 248.1 259 51.0
Actinidia20088 Actinidia chinensis HOM05D005401 ORTHO05D006582 1.1e-62 245.0 206 64.1
Cc00_g25980 Coffea canephora HOM05D005401 ORTHO05D006582 7.0e-57 225.7 206 58.7
PRCOL_00001389 Prasinoderma coloniale HOM05D005401 ORTHO05D006582 7.0e-57 225.7 448 33.0
Cc06_g17330 Coffea canephora HOM05D005401 ORTHO05D006582 6.6e-55 219.2 204 58.8
Cc00_g35900 Coffea canephora HOM05D005401 ORTHO05D006582 2.1e-45 187.6 108 77.8
SEGI_17010 Sequoiadendron giganteum HOM05D005401 ORTHO05D006582 2.1e-45 187.6 174 58.0
Cc00_g32180 Coffea canephora HOM05D005401 ORTHO05D006582 6.2e-45 186.0 177 57.1
MD15G1342000 Malus domestica HOM05D005401 ORTHO05D006582 2.0e-43 181.0 248 43.5
Cpa.g.sc42.131 Carica papaya HOM05D005401 ORTHO05D006582 1.4e-41 174.9 145 58.6
MCO05G520 Micromonas commoda HOM05D005401 ORTHO05D006582 1.9e-41 174.5 476 28.2
BcaB02g09802 Brassica carinata HOM05D005401 ORTHO05D006582 8.6e-39 165.6 207 47.8
TPR.G8435 Trifolium pratense HOM05D005401 ORTHO05D006582 1.1e-33 148.7 150 49.3
Cfa027226 Carpinus fangiana HOM05D005401 ORTHO05D006582 3.1e-28 130.6 245 33.5
ClCG01G015490 Citrullus lanatus HOM05D005401 ORTHO05D006582 3.4e-27 127.1 81 69.1
MD15G1342300 Malus domestica HOM05D005401 ORTHO05D006582 2.9e-26 124.0 110 60.9
CDE10G0537 Ceratophyllum demersum HOM05D005401 ORTHO05D006582 3.8e-26 123.6 109 58.7
Actinidia08420 Actinidia chinensis HOM05D005401 ORTHO05D006582 1.4e-25 121.7 81 64.2
Cpa.g.c33663 Carica papaya HOM05D005401 ORTHO05D006582 2.7e-24 117.5 75 69.3
PRCOL_00000149 Prasinoderma coloniale HOM05D003901 ORTHO05D004511 5.1e-23 113.2 466 24.7
Cfa026613 Carpinus fangiana HOM05D003901 ORTHO05D004511 1.3e-21 108.6 371 24.8
Cpa.g.sc3234.2 Carica papaya HOM05D005401 ORTHO05D006582 1.7e-18 98.2 67 64.2
VMungo0251G1870 Vigna mungo HOM05D000140 ORTHO05D004393 7.1e-17 92.8 84 53.6
BcaB02g09805 Brassica carinata HOM05D005401 ORTHO05D006582 1.3e-15 88.6 262 30.5
Cre13.g575950 Chlamydomonas reinhardtii HOM05D003901 ORTHO05D004511 6.7e-15 86.3 376 24.7
SMO139G0105 Selaginella moellendorffii HOM05D003901 ORTHO05D004511 1.2e-11 75.5 409 21.8
SMO165G0087 Selaginella moellendorffii HOM05D003901 ORTHO05D004511 1.2e-11 75.5 409 21.8
HanXRQChr04g0116501 Helianthus annuus HOM05D005401 ORTHO05D006582 2.6e-11 74.3 39 74.4
Ah.08g215860 Amaranthus hybridus HOM05D003901 ORTHO05D004511 7.6e-11 72.8 448 20.8
Zm00001eb121570 Zea mays HOM05D003901 ORTHO05D004511 7.6e-11 72.8 411 20.7
Lj3g0011305 Lotus japonicus HOM05D005401 ORTHO05D006582 2.2e-10 71.2 81 44.4
Psat1g035320 Pisum sativum HOM05D005401 ORTHO05D006582 2.2e-10 71.2 55 56.4
Lalb_Chr01g0004811 Lupinus albus HOM05D003901 ORTHO05D004511 3.8e-10 70.5 401 21.2
Psat5g256560 Pisum sativum HOM05D003901 ORTHO05D004511 3.8e-10 70.5 253 25.7
AUR62009782 Chenopodium quinoa HOM05D003901 ORTHO05D004511 4.9e-10 70.1 478 21.1
Psat7g085120 Pisum sativum HOM05D005401 ORTHO05D006582 6.5e-10 69.7 55 54.5
CDE06G1793 Ceratophyllum demersum HOM05D003901 ORTHO05D004511 1.1e-09 68.9 316 22.8
Zm00001eb307860 Zea mays HOM05D003901 ORTHO05D004511 1.4e-09 68.6 477 19.7
Os09g0567700 Oryza sativa ssp. japonica HOM05D003901 ORTHO05D004511 3.2e-09 67.4 470 20.9
AUR62039227 Chenopodium quinoa HOM05D003901 ORTHO05D004511 4.2e-09 67.0 477 21.0
Thecc.09G286400 Theobroma cacao HOM05D003901 ORTHO05D004511 7.1e-09 66.2 253 25.3
Carub.0005s1017 Capsella rubella HOM05D003901 ORTHO05D004511 9.3e-09 65.9 481 20.6
Pp3c27_1720 Physcomitrium patens HOM05D003901 ORTHO05D004511 1.2e-08 65.5 477 20.3
AT3G44530 Arabidopsis thaliana HOM05D003901 ORTHO05D004511 2.1e-08 64.7 480 20.2
AL5G22600 Arabidopsis lyrata HOM05D003901 ORTHO05D004511 2.7e-08 64.3 480 20.0
AUR62044072 Chenopodium quinoa HOM05D003901 ORTHO05D004511 2.7e-08 64.3 459 21.4
Manes.04G005300 Manihot esculenta HOM05D003901 ORTHO05D004511 2.7e-08 64.3 322 23.9
FvH4_3g24580 Fragaria vesca HOM05D003901 ORTHO05D004511 3.5e-08 63.9 254 24.0
RcHm_v2.0_Chr1g0317731 Rosa chinensis HOM05D003901 ORTHO05D004511 3.5e-08 63.9 311 23.8
Psat4g107600 Pisum sativum HOM05D005401 ORTHO05D006582 6.0e-08 63.2 49 53.1
vmacro03304 Vaccinium macrocarpon HOM05D003901 ORTHO05D004511 7.9e-08 62.8 458 20.5
Ah.15g095680 Amaranthus hybridus HOM05D003901 ORTHO05D004511 1.0e-07 62.4 396 21.2
Pp3c16_16320 Physcomitrium patens HOM05D003901 ORTHO05D004511 1.3e-07 62.0 461 20.2
Atru.chr3.3302 Acer truncatum HOM05D003901 ORTHO05D004511 1.8e-07 61.6 316 21.8
SHI06109 Sapria himalayana HOM05D003901 ORTHO05D004511 1.8e-07 61.6 450 21.6


User provided reference genes

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