Gene: Sopen10g035000

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen10g035000
  • Transcript Identifier Sopen10g035000.1
  • Gene Type Coding gene
  • Location Spenn-ch10 : 81681007-81682218 : positive

Gene Family Information

  • ID HOM05D002835
  • #Genes/#Species 245/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen10g035000.1

Descriptions

  • Description Mutants of this gene were initially identified because of the trichome morphogenesis phenotype. Those trichomes have multiple nuclei, a defect that turns out not to be restricted to the trichomes but also in all endoreduplicating cell types. This gene encodes a ubiquitin-binding protein with sequence similarities with yeast proteins that are components of the ESCRTI-III complexes. The Arabidopsis protein is found associated with the endosome. | ELC | CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like , Tumour susceptibility gene 101 , Ubiquitin-conjugating enzyme, E2 , Steadiness box | BEST Arabidopsis thaliana protein match is: ELCH-like
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006464
IEA
InterProcellular protein modification process
GO:0015031
IEA
InterProprotein transport
GO:0051301
ISO
PLAZA Integrative Orthologycell division AT3G12400
GO:0010091
ISO
PLAZA Integrative Orthologytrichome branching AT3G12400

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT3G12400
GO:0043130
ISO
PLAZA Integrative Orthologyubiquitin binding AT3G12400

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005769
ISO
PLAZA Integrative Orthologyearly endosome AT3G12400
GO:0005770
ISO
PLAZA Integrative Orthologylate endosome AT3G12400
GO:0032991
ISO
PLAZA Integrative Orthologyprotein-containing complex AT3G12400

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR017916 Steadiness box (SB) domain
IPR016135 Ubiquitin-conjugating enzyme/RWD-like
IPR008883 Ubiquitin E2 variant, N-terminal
IPR037202 ESCRT assembly domain
Mapman id Description
22.4.1.1.1 Vesicle trafficking.endocytic trafficking.ESCRT-mediated sorting.ESCRT-I complex.component VPS23