Gene: Sopen10g033810

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen10g033810
  • Transcript Identifier Sopen10g033810.2
  • Gene Type Coding gene
  • Location Spenn-ch10 : 80883640-80887723 : negative

Gene Family Information

  • ID HOM05D001414
  • #Genes/#Species 444/95
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen10g033810.2

Descriptions

  • Description Homeodomain-like superfamily protein | FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity | INVOLVED IN: in 9 processes | LOCATED IN: chloroplast | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: SANT, DNA-binding , Homeodomain-like , Myb, DNA-binding , HTH transcriptional regulator, Myb-type, DNA-binding , Myb-like DNA-binding domain, SHAQKYF class | BEST Arabidopsis thaliana protein match is: LHY/CCA1-like 1
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0048573
ISO
PLAZA Integrative Orthologyphotoperiodism, flowering AT3G09600
GO:0043966
ISO
PLAZA Integrative Orthologyhistone H3 acetylation AT3G09600
GO:0032922
ISO
PLAZA Integrative Orthologycircadian regulation of gene expression AT3G09600
GO:0010628
ISO
PLAZA Integrative Orthologypositive regulation of gene expression AT3G09600
GO:0006355
ISO
PLAZA Integrative Orthologyregulation of transcription, DNA-templated AT3G09600
GO:0007623
ISO
PLAZA Integrative Orthologycircadian rhythm AT5G02840
GO:0042752
ISO
PLAZA Integrative Orthologyregulation of circadian rhythm AT5G02840
GO:0045944
ISO
PLAZA Integrative Orthologypositive regulation of transcription by RNA polymerase II AT3G09600
GO:0042753
ISO
PLAZA Integrative Orthologypositive regulation of circadian rhythm AT3G09600

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
InterProDNA binding
GO:0000976
ISO
PLAZA Integrative Orthologytranscription cis-regulatory region binding AT5G02840
GO:0043565
ISO
PLAZA Integrative Orthologysequence-specific DNA binding AT3G09600

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT5G02840

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR006447 Myb domain, plants
IPR001005 SANT/Myb domain
IPR017930 Myb domain
IPR009057 Homeobox-like domain superfamily
Mapman id Description
15.5.2.4 RNA biosynthesis.transcriptional regulation.MYB transcription factor superfamily.transcription factor (REVEILLE)
27.1.6.2 Multi-process regulation.circadian clock system.evening element regulation.clock factor (REVEILLE)