Gene: Sopen10g033810
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen10g033810
- Transcript Identifier Sopen10g033810.2
- Gene Type Coding gene
- Location Spenn-ch10 : 80883640-80887723 : negative
Gene Family Information
- ID HOM05D001414
- #Genes/#Species 444/95
- Phylogenetic origin
- ID ORTHO05D000619
- #Genes/#Species 733/100
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Sopen10g033810.2
Descriptions
- Description Homeodomain-like superfamily protein | FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity | INVOLVED IN: in 9 processes | LOCATED IN: chloroplast | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: SANT, DNA-binding , Homeodomain-like , Myb, DNA-binding , HTH transcriptional regulator, Myb-type, DNA-binding , Myb-like DNA-binding domain, SHAQKYF class | BEST Arabidopsis thaliana protein match is: LHY/CCA1-like 1
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0048573 | ISO | PLAZA Integrative Orthology | photoperiodism, flowering | AT3G09600 |
| GO:0043966 | ISO | PLAZA Integrative Orthology | histone H3 acetylation | AT3G09600 |
| GO:0032922 | ISO | PLAZA Integrative Orthology | circadian regulation of gene expression | AT3G09600 |
| GO:0010628 | ISO | PLAZA Integrative Orthology | positive regulation of gene expression | AT3G09600 |
| GO:0006355 | ISO | PLAZA Integrative Orthology | regulation of transcription, DNA-templated | AT3G09600 |
| GO:0007623 | ISO | PLAZA Integrative Orthology | circadian rhythm | AT5G02840 |
| GO:0042752 | ISO | PLAZA Integrative Orthology | regulation of circadian rhythm | AT5G02840 |
| GO:0045944 | ISO | PLAZA Integrative Orthology | positive regulation of transcription by RNA polymerase II | AT3G09600 |
| GO:0042753 | ISO | PLAZA Integrative Orthology | positive regulation of circadian rhythm | AT3G09600 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0000976 | ISO | PLAZA Integrative Orthology | transcription cis-regulatory region binding | AT5G02840 |
| GO:0043565 | ISO | PLAZA Integrative Orthology | sequence-specific DNA binding | AT3G09600 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT5G02840 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |