Gene: AT5G02840
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT5G02840
- Transcript Identifier AT5G02840.3
- Gene Type Coding gene
- Location Chr5 : 648794-651204 : positive
Gene Family Information
- ID HOM05D001414
- #Genes/#Species 444/95
- Phylogenetic origin
- ID ORTHO05D000619
- #Genes/#Species 733/100
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT5G02840.3
- symbol LCL1
- Alias RVE4,REVEILLE 4
- uniprot Q6R0G4
Descriptions
- Description LHY/CCA1-like 1
- Computational description LHY/CCA1-like 1 (LCL1); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G09600.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
- Computational description LHY/CCA1-like 1 (LCL1); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G09600.1); Has 1341 Blast hits to 1331 proteins in 115 species: Archae - 0; Bacteria - 0; Metazoa - 91; Fungi - 0; Plants - 1058; Viruses - 0; Other Eukaryotes - 192 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0007623 | IMP | Gene Ontology | circadian rhythm | 1 |
| GO:0042752 | IGI | Gene Ontology | regulation of circadian rhythm | 2 |
| GO:0006355 | IEA | GOA Database | regulation of transcription, DNA-templated |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003677 | IEA | Gene Ontology | DNA binding | |
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0003700 | ISS | Gene Ontology | DNA-binding transcription factor activity | 3 |
| GO:0000976 | IPI | Gene Ontology | transcription cis-regulatory region binding | 4 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | IDA ISM | Gene Ontology | nucleus | 1 |
| GO:0005737 | IEA | GOA Database | cytoplasm |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |