Gene: Sopen10g005400

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen10g005400
  • Transcript Identifier Sopen10g005400.1
  • Gene Type Coding gene
  • Location Spenn-ch10 : 3958357-3968270 : negative

Gene Family Information

  • ID HOM05D000337
  • #Genes/#Species 1388/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen10g005400.1

Descriptions

  • Description Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff, Wolf Scheible, 2010, personal communication). | TRICHOME BIREFRINGENCE-LIKE 25 (TBL25) | CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant | BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 26
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0015074
IEA
InterProDNA integration

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001584 Integrase, catalytic core
IPR036397 Ribonuclease H superfamily
IPR029962 Trichome birefringence-like family
IPR025846 PMR5 N-terminal domain
IPR004993 GH3 family
IPR012337 Ribonuclease H-like superfamily
IPR029472 Retrotransposon Copia-like, N-terminal
IPR026057 PC-Esterase
IPR013103 Reverse transcriptase, RNA-dependent DNA polymerase
IPR025724 GAG-pre-integrase domain
Mapman id Description
21.2.3.2.1 Cell wall organisation.hemicellulose.heteromannan.modification and degradation.mannan O-acetyltransferase (MOAT)