Gene: Sopen09g031960

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen09g031960
  • Transcript Identifier Sopen09g031960.1
  • Gene Type Coding gene
  • Location Spenn-ch09 : 80342210-80345621 : negative

Gene Family Information

  • ID HOM05D001386
  • #Genes/#Species 453/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen09g031960.1

Descriptions

  • Description SAR DNA-binding protein, putative, strong similarity to SAR DNA-binding protein-1 (Pisum sativum) GI:3132696 | contains Pfam profile PF01798: Putative snoRNA binding domain | encodes NOP58-like protein | NOP56-like pre RNA processing ribonucleoprotein | FUNCTIONS IN: DNA binding | INVOLVED IN: biological_process unknown | LOCATED IN: nucleolus, membrane | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Pre-mRNA processing ribonucleoprotein, snoRNA-binding domain , NOP5, N-terminal , NOSIC | BEST Arabidopsis thaliana protein match is: NOP56-like pre RNA processing ribonucleoprotein
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Functional Annotation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0030515
IEA
InterProsnoRNA binding
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT3G05060

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0031428
IEA
InterProbox C/D RNP complex
GO:0032040
IEA
InterProsmall-subunit processome
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT3G05060

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR002687 Nop domain
IPR042239 Nop, C-terminal domain
IPR012974 NOP5, N-terminal
IPR036070 Nop domain superfamily
IPR045056 Nucleolar protein Nop56/Nop58
IPR012976 NOSIC
Mapman id Description
17.1.1.2.1.5.3 Protein biosynthesis.ribosome biogenesis.rRNA biosynthesis.post-transcriptional rRNA modification.methylation.C/D small nucleolar ribonucleoprotein (snoRNP) rRNA methylation complex.snoRNP scaffold component Nop58