Gene: Sopen09g015070
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen09g015070
- Transcript Identifier Sopen09g015070.1
- Gene Type Coding gene
- Location Spenn-ch09 : 33761479-33804137 : negative
Gene Family Information
- ID HOM05D000014
- #Genes/#Species 7439/72
- Phylogenetic origin
- ID ORTHO05D000001
- #Genes/#Species 28434/96
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
- Block Duplication Block duplicate
Labels
Identifiers
- tid Sopen09g015070.1
Descriptions
- Description Retrovirus-related Pol polyprotein from transposon TNT 1-94 | Reverse transcriptase (EC 2.7.7.49) | Endonuclease) - Nicotiana tabacum (Common tobacco), Encodes a small GTP-binding protein implicated in ER to cis-Golgi transport of other proteins. A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases. The protein is found associated to the ER and free in the cytosol. | secretion-associated RAS 1B (SAR1B) | FUNCTIONS IN: GTP binding | INVOLVED IN: ER to Golgi vesicle-mediated transport | LOCATED IN: cytosol, peripheral to membrane of membrane fraction, endoplasmic reticulum, plasma membrane | EXPRESSED IN: 25 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: Small GTP-binding protein , Small GTPase SAR1-type , ARF/SAR superfamily | BEST Arabidopsis thaliana protein match is: secretion-associated RAS super family 2
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0015074 | IEA | InterPro | DNA integration |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003924 | IEA | InterPro | GTPase activity | |
| GO:0005525 | IEA | InterPro | GTP binding | |
| GO:0003676 | IEA | InterPro | nucleic acid binding |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR012337 | Ribonuclease H-like superfamily |
| IPR006689 | Small GTPase superfamily, ARF/SAR type |
| IPR036397 | Ribonuclease H superfamily |
| IPR021109 | Aspartic peptidase domain superfamily |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR043502 | DNA/RNA polymerase superfamily |
| IPR013103 | Reverse transcriptase, RNA-dependent DNA polymerase |
| IPR001584 | Integrase, catalytic core |
| Mapman id | Description |
|---|---|
| 22.1.1.2.1 | Vesicle trafficking.ER export trafficking.Coat protein II (COPII) coatomer machinery.coat protein recruiting.small GTPase (Sar1) |