Gene: Sopen08g027630

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen08g027630
  • Transcript Identifier Sopen08g027630.1
  • Gene Type Coding gene
  • Location Spenn-ch08 : 67325520-67330995 : negative

Gene Family Information

  • ID HOM05D001703
  • #Genes/#Species 380/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen08g027630.1

Descriptions

  • Description Nuclear encoded protein consists of the five domains conserved in EF-G proteins, with two GTP-binding sites in the first domain, and an additional transit peptide at the N-terminus. Localized in chloroplasts. Point mutation results in a delay in the onset of germination. At early developmental stage embryos still contain undifferentiated proplastids. The greening of cotyledons is severely impaired in light-grown mutant sco1 seedlings, whereas the following true leaves develop normally as in wild-type plants. | SNOWY COTYLEDON 1 (SCO1) | FUNCTIONS IN: translation factor activity, nucleic acid binding, GTP binding, translation elongation factor activity, ATP binding | INVOLVED IN: post-embryonic development, chloroplast organization, seed germination | LOCATED IN: mitochondrion, apoplast, chloroplast stroma, chloroplast, chloroplast envelope | EXPRESSED IN: 25 plant structures | EXPRESSED DURING: 14 growth stages | CONTAINS InterPro DOMAIN/s: Protein synthesis factor, GTP-binding , Translation elongation factor EFG/EF2, domain IV , Small GTP-binding protein , Translation elongation factor EFTu/EF1A, domain 2 , Translation elongation factor EFG/EF2, C-terminal , Translation elongation factor EFG/EF2 , Ribosomal protein S5 domain 2-type fold , Ribosomal protein S5 domain 2-type fold, subgroup , Elongation factor G/III/V , Translation elongation/initiation factor/Ribosomal, beta-barrel | BEST Arabidopsis thaliana protein match is: Translation elongation factor EFG/EF2 protein
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006414
IEA
InterProtranslational elongation
GO:0009791
ISO
PLAZA Integrative Orthologypost-embryonic development AT1G62750
GO:0009658
ISO
PLAZA Integrative Orthologychloroplast organization AT1G62750
GO:0009845
ISO
PLAZA Integrative Orthologyseed germination AT1G62750

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005525
IEA
InterProGTP binding
GO:0003924
IEA
InterProGTPase activity
GO:0003746
IEA
InterProtranslation elongation factor activity
GO:0005524
ISO
PLAZA Integrative OrthologyATP binding AT1G62750
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT1G62750

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009570
ISO
PLAZA Integrative Orthologychloroplast stroma AT1G62750
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast AT1G62750
GO:0005739
ISO
PLAZA Integrative Orthologymitochondrion AT1G62750
GO:0048046
ISO
PLAZA Integrative Orthologyapoplast AT1G62750
GO:0009941
ISO
PLAZA Integrative Orthologychloroplast envelope AT1G62750

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR005517 Translation elongation factor EFG/EF2, domain IV
IPR000795 Translational (tr)-type GTP-binding domain
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR035647 EF-G domain III/V-like
IPR009000 Translation protein, beta-barrel domain superfamily
IPR005225 Small GTP-binding protein domain
IPR020568 Ribosomal protein S5 domain 2-type fold
IPR009022 Elongation factor G, domain III
IPR004161 Translation elongation factor EFTu-like, domain 2
IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup
IPR041095 Elongation Factor G, domain II
IPR000640 Elongation factor EFG, domain V-like
IPR035649 EFG, domain V
IPR004540 Translation elongation factor EFG/EF2
Mapman id Description
17.7.4.3 Protein biosynthesis.organelle machinery.translation elongation.elongation factor (EF-G)