Gene: Sopen08g027630
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen08g027630
- Transcript Identifier Sopen08g027630.1
- Gene Type Coding gene
- Location Spenn-ch08 : 67325520-67330995 : negative
Gene Family Information
- ID HOM05D001703
- #Genes/#Species 380/99
- Phylogenetic origin
- ID ORTHO05D007194
- #Genes/#Species 133/99
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Sopen08g027630.1
Descriptions
- Description Nuclear encoded protein consists of the five domains conserved in EF-G proteins, with two GTP-binding sites in the first domain, and an additional transit peptide at the N-terminus. Localized in chloroplasts. Point mutation results in a delay in the onset of germination. At early developmental stage embryos still contain undifferentiated proplastids. The greening of cotyledons is severely impaired in light-grown mutant sco1 seedlings, whereas the following true leaves develop normally as in wild-type plants. | SNOWY COTYLEDON 1 (SCO1) | FUNCTIONS IN: translation factor activity, nucleic acid binding, GTP binding, translation elongation factor activity, ATP binding | INVOLVED IN: post-embryonic development, chloroplast organization, seed germination | LOCATED IN: mitochondrion, apoplast, chloroplast stroma, chloroplast, chloroplast envelope | EXPRESSED IN: 25 plant structures | EXPRESSED DURING: 14 growth stages | CONTAINS InterPro DOMAIN/s: Protein synthesis factor, GTP-binding , Translation elongation factor EFG/EF2, domain IV , Small GTP-binding protein , Translation elongation factor EFTu/EF1A, domain 2 , Translation elongation factor EFG/EF2, C-terminal , Translation elongation factor EFG/EF2 , Ribosomal protein S5 domain 2-type fold , Ribosomal protein S5 domain 2-type fold, subgroup , Elongation factor G/III/V , Translation elongation/initiation factor/Ribosomal, beta-barrel | BEST Arabidopsis thaliana protein match is: Translation elongation factor EFG/EF2 protein
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006414 | IEA | InterPro | translational elongation | |
| GO:0009791 | ISO | PLAZA Integrative Orthology | post-embryonic development | AT1G62750 |
| GO:0009658 | ISO | PLAZA Integrative Orthology | chloroplast organization | AT1G62750 |
| GO:0009845 | ISO | PLAZA Integrative Orthology | seed germination | AT1G62750 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005525 | IEA | InterPro | GTP binding | |
| GO:0003924 | IEA | InterPro | GTPase activity | |
| GO:0003746 | IEA | InterPro | translation elongation factor activity | |
| GO:0005524 | ISO | PLAZA Integrative Orthology | ATP binding | AT1G62750 |
| GO:0003729 | ISO | PLAZA Integrative Orthology | mRNA binding | AT1G62750 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009570 | ISO | PLAZA Integrative Orthology | chloroplast stroma | AT1G62750 |
| GO:0009507 | ISO | PLAZA Integrative Orthology | chloroplast | AT1G62750 |
| GO:0005739 | ISO | PLAZA Integrative Orthology | mitochondrion | AT1G62750 |
| GO:0048046 | ISO | PLAZA Integrative Orthology | apoplast | AT1G62750 |
| GO:0009941 | ISO | PLAZA Integrative Orthology | chloroplast envelope | AT1G62750 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR005517 | Translation elongation factor EFG/EF2, domain IV |
| IPR000795 | Translational (tr)-type GTP-binding domain |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR035647 | EF-G domain III/V-like |
| IPR009000 | Translation protein, beta-barrel domain superfamily |
| IPR005225 | Small GTP-binding protein domain |
| IPR020568 | Ribosomal protein S5 domain 2-type fold |
| IPR009022 | Elongation factor G, domain III |
| IPR004161 | Translation elongation factor EFTu-like, domain 2 |
| IPR014721 | Ribosomal protein S5 domain 2-type fold, subgroup |
| IPR041095 | Elongation Factor G, domain II |
| IPR000640 | Elongation factor EFG, domain V-like |
| IPR035649 | EFG, domain V |
| IPR004540 | Translation elongation factor EFG/EF2 |
| Mapman id | Description |
|---|---|
| 17.7.4.3 | Protein biosynthesis.organelle machinery.translation elongation.elongation factor (EF-G) |