Gene: AT1G62750

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G62750
  • Transcript Identifier AT1G62750.1
  • Gene Type Coding gene
  • Location Chr1 : 23233622-23236321 : negative

Gene Family Information

  • ID HOM05D001703
  • #Genes/#Species 380/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G62750.1
  • symbol SCO1
  • Alias ATSCO1/CPEF-G,ATSCO1,SNOWY COTYLEDON 1
  • full_name SNOWY COTYLEDON 1
  • uniprot Q9SI75

Descriptions

  • Description Translation elongation factor EFG/EF2 protein
  • Computational description SNOWY COTYLEDON 1 (SCO1); FUNCTIONS IN: translation factor activity, nucleic acid binding, GTP binding, translation elongation factor activity, ATP binding; INVOLVED IN: post-embryonic development, chloroplast organization, seed germination; LOCATED IN: mitochondrion, apoplast, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation factor EFG/EF2, domain IV (InterPro:IPR005517), Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EFG/EF2, C-terminal (InterPro:IPR000640), Translation elongation factor EFG/EF2 (InterPro:IPR004540), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721), Elongation factor G/III/V (InterPro:IPR009022), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: Translation elongation factor EFG/EF2 protein (TAIR:AT2G45030.1); Has 79823 Blast hits to 67706 proteins in 7071 species: Archae - 929; Bacteria - 47320; Metazoa - 4453; Fungi - 5428; Plants - 1613; Viruses - 3; Other Eukaryotes - 20077 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0032543
IBA
Gene Ontologymitochondrial translation1
GO:0006412
IEA
GOA Databasetranslation
GO:0006414
IEA
Gene Ontologytranslational elongation
GO:0006414
IEA
InterProtranslational elongation
GO:0009658
IMP
Gene Ontologychloroplast organization2
GO:0009791
IMP
Gene Ontologypost-embryonic development2
GO:0009845
IMP
Gene Ontologyseed germination2
GO:0032790
IBA
Gene Ontologyribosome disassembly1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003924
IEA
GOA DatabaseGTPase activity
GO:0003924
IBA
Gene OntologyGTPase activity1
GO:0003924
IEA
InterProGTPase activity
GO:0003746
IEA
GOA Databasetranslation elongation factor activity
GO:0003746
IEA
InterProtranslation elongation factor activity
GO:0005525
IEA
GOA DatabaseGTP binding
GO:0005525
ISS
Gene OntologyGTP binding2
GO:0005525
IEA
InterProGTP binding
GO:0005524
IDA
GOA DatabaseATP binding
GO:0005524
HDA
Gene OntologyATP binding3
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0003729
IDA
Gene OntologymRNA binding4

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0048046
IDA
GOA Databaseapoplast
GO:0048046
HDA
Gene Ontologyapoplast5
GO:0009507
IEA
GOA Databasechloroplast
GO:0009507
IDA, HDA
ISM
Gene Ontologychloroplast2 6
GO:0009570
IDA
GOA Databasechloroplast stroma
GO:0009570
HDA
Gene Ontologychloroplast stroma7
GO:0009941
IDA
GOA Databasechloroplast envelope
GO:0009941
HDA
Gene Ontologychloroplast envelope8
GO:0005739
IDA
GOA Databasemitochondrion
GO:0005739
HDA
IBA
Gene Ontologymitochondrion1 3
GO:0009536
IEA
GOA Databaseplastid
GO:0005634
HDA
Gene Ontologynucleus9

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR004161 Translation elongation factor EFTu-like, domain 2
IPR005517 Translation elongation factor EFG/EF2, domain IV
IPR009022 Elongation factor G, domain III
IPR041095 Elongation Factor G, domain II
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR004540 Translation elongation factor EFG/EF2
IPR000640 Elongation factor EFG, domain V-like
IPR000795 Translational (tr)-type GTP-binding domain
IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup
IPR005225 Small GTP-binding protein domain
IPR035649 EFG, domain V
IPR035647 EF-G domain III/V-like
IPR009000 Translation protein, beta-barrel domain superfamily
IPR020568 Ribosomal protein S5 domain 2-type fold
Mapman id Description
17.7.4.3 Protein biosynthesis.organelle machinery.translation elongation.elongation factor (EF-G)