Gene: Sopen08g018460

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen08g018460
  • Transcript Identifier Sopen08g018460.1
  • Gene Type Coding gene
  • Location Spenn-ch08 : 56288457-56291280 : negative

Gene Family Information

  • ID HOM05D000835
  • #Genes/#Species 712/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen08g018460.1

Descriptions

  • Description encodes a translation elongation factor 2-like protein that is involved in cold-induced translation. Mutations in this gene specifically blocks low temperature-induced transcription of cold-responsive genes but induces the expression of CBF genes and mutants carrying the recessive mutations fail to acclimate to cold and is freezing sensitive. | LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1 (LOS1) | FUNCTIONS IN: translation factor activity, nucleic acid binding, copper ion binding, translation elongation factor activity | INVOLVED IN: response to cold | LOCATED IN: cytosol, nucleolus, chloroplast, plasma membrane, membrane | EXPRESSED IN: 29 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: Protein synthesis factor, GTP-binding , Translation elongation factor EFG/EF2, domain IV , Translation elongation factor EFG/EF2, C-terminal , Translation elongation factor EFTu/EF1A, domain 2 , Ribosomal protein S5 domain 2-type fold , Ribosomal protein S5 domain 2-type fold, subgroup , Elongation factor G/III/V , Translation elongation/initiation factor/Ribosomal, beta-barrel | BEST Arabidopsis thaliana protein match is: Ribosomal protein S5/Elongation factor G/III/V family protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009409
ISO
PLAZA Integrative Orthologyresponse to cold AT1G56070
GO:0009631
ISO
PLAZA Integrative Orthologycold acclimation AT1G56070

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003924
IEA
InterProGTPase activity
GO:0005525
IEA
InterProGTP binding
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT1G56070

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast AT1G56070
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT1G56070
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT1G56070
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT1G56070
GO:0005774
ISO
PLAZA Integrative Orthologyvacuolar membrane AT1G56070
GO:0005886
ISO
PLAZA Integrative Orthologyplasma membrane AT1G56070

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000795 Translational (tr)-type GTP-binding domain
IPR009000 Translation protein, beta-barrel domain superfamily
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR005225 Small GTP-binding protein domain
IPR035647 EF-G domain III/V-like
IPR005517 Translation elongation factor EFG/EF2, domain IV
IPR000640 Elongation factor EFG, domain V-like
IPR020568 Ribosomal protein S5 domain 2-type fold
IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup
IPR041095 Elongation Factor G, domain II
IPR004161 Translation elongation factor EFTu-like, domain 2
Mapman id Description
17.5.2.1 Protein biosynthesis.translation elongation.eEF2 mRNA-translocation factor activity.mRNA-translocation factor (eEF2)