Gene: Sopen07g025970
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen07g025970
- Transcript Identifier Sopen07g025970.1
- Gene Type Coding gene
- Location Spenn-ch07 : 71782070-71789968 : positive
Gene Family Information
- ID HOM05D000228
- #Genes/#Species 1809/100
- Phylogenetic origin
- ID ORTHO05D001122
- #Genes/#Species 480/99
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid Sopen07g025970.1
Descriptions
- Description Aconitate hydratase, cytoplasmic (EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase) - Cucurbita maxima (Pumpkin) (Winter squash), Encodes an aconitase that can catalyze the conversion of citrate to isocitrate through a cis-aconitate intermediate, indicating that it may participate in the TCA cycle and other primary metabolic pathways. The protein is believed to accumulate in the mitochondria and the cytosol. It affects CSD2 (At2g28190 - a superoxide dismutase) transcript levels and may play a role in the response to oxidative stress. One member of the family (ACO1 - At35830) was shown to specifically bind to the 5 UTR of CSD2 in vitro. ACO3 is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. | aconitase 3 (ACO3) | FUNCTIONS IN: aconitate hydratase activity, copper ion binding, ATP binding | INVOLVED IN: in 6 processes | LOCATED IN: cytosol, mitochondrion, cell wall, plasma membrane, chloroplast | EXPRESSED IN: 27 plant structures | EXPRESSED DURING: 16 growth stages | CONTAINS InterPro DOMAIN/s: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha , Aconitase family, 4Fe-4S cluster binding site , Aconitase A/isopropylmalate dehydratase small subunit, swivel , Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 , Aconitase/Iron regulatory protein 2/2-methylisocitrate dehydratase , Aconitase-like core , Aconitase/3-isopropylmalate dehydratase, swivel , Aconitase/iron regulatory protein 2 , Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 | BEST Arabidopsis thaliana protein match is: aconitase 1
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006979 | ISO | PLAZA Integrative Orthology | response to oxidative stress | AT4G26970 |
| GO:1990641 | ISO | PLAZA Integrative Orthology | response to iron ion starvation | AT4G26970 |
| GO:0006101 | ISO | PLAZA Integrative Orthology | citrate metabolic process | AT4G26970 |
| GO:0006102 | ISO | PLAZA Integrative Orthology | isocitrate metabolic process | AT4G26970 |
| GO:0046686 | ISO | PLAZA Integrative Orthology | response to cadmium ion | AT4G26970 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005507 | ISO | PLAZA Integrative Orthology | copper ion binding | AT4G26970 |
| GO:0003994 | ISO | PLAZA Integrative Orthology | aconitate hydratase activity | AT4G26970 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009507 | ISO | PLAZA Integrative Orthology | chloroplast | AT4G26970 |
| GO:0005739 | ISO | PLAZA Integrative Orthology | mitochondrion | AT4G26970 |
| GO:0005783 | ISO | PLAZA Integrative Orthology | endoplasmic reticulum | AT4G26970 |
| GO:0005794 | ISO | PLAZA Integrative Orthology | Golgi apparatus | AT4G26970 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR044137 | Aconitase A, swivel domain |
| IPR015931 | Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 |
| IPR001030 | Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain |
| IPR036008 | Aconitase, iron-sulfur domain |
| IPR000573 | Aconitase A/isopropylmalate dehydratase small subunit, swivel domain |
| IPR006249 | Aconitase/Iron-responsive element-binding protein 2 |
| IPR015928 | Aconitase/3-isopropylmalate dehydratase, swivel |