Gene: Sopen06g033780
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen06g033780
- Transcript Identifier Sopen06g033780.1
- Gene Type Coding gene
- Location Spenn-ch06 : 59152142-59156637 : positive
Gene Family Information
- ID HOM05D006271
- #Genes/#Species 127/90
- Phylogenetic origin
- ID ORTHO05D008237
- #Genes/#Species 121/90
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Sopen06g033780.1
Descriptions
- Description Encodes RDM4, a transcriptional regulator functioning in RNA-directed DNA methylation and plant development. | RNA-directed DNA methylation 4 (RDM4) | CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1762
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006306 | ISO | PLAZA Integrative Orthology | DNA methylation | AT2G30280 |
| GO:0009791 | ISO | PLAZA Integrative Orthology | post-embryonic development | AT2G30280 |
| GO:0006355 | ISO | PLAZA Integrative Orthology | regulation of transcription, DNA-templated | AT2G30280 |
| GO:0006342 | ISO | PLAZA Integrative Orthology | chromatin silencing | AT2G30280 |
| GO:0032502 | ISO | PLAZA Integrative Orthology | developmental process | AT2G30280 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003700 | ISO | PLAZA Integrative Orthology | DNA-binding transcription factor activity | AT2G30280 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR013883 | Transcription factor Iwr1 domain |
| Mapman id | Description |
|---|---|
| 12.5.1.6 | Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.RNA polymerase-IV/V auxiliary factor (RDM4) |