Gene: Sopen05g032860
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen05g032860
- Transcript Identifier Sopen05g032860.1
- Gene Type Coding gene
- Location Spenn-ch05 : 76263934-76272244 : negative
Gene Family Information
- ID HOM05D004869
- #Genes/#Species 152/98
- Phylogenetic origin
- ID ORTHO05D005893
- #Genes/#Species 150/98
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid Sopen05g032860.1
Descriptions
- Description Encodes a protein with similarity to acyl-CoA dehydrogenases. Mutations in IBR3 render plants resistant to indole-3-butryic acid, a putative storage form of the biologically active auxin IAA (indole-3-acetic acid). IBR3 is hypothesized to carry out the second step in a, #946, -oxidation-like process of IBA metabolism in Arabidopsis. Though its subcellular location has not been determined, IBR3 has a peroxisomal targeting sequence and two other putative IBA metabolic enzymes (IBR1 and IBR10) can be found in this organelle. No specific enzymatic activity has been documented for IBR3, but double mutant analyses with CHY1 argue against a role for IBR3 in general fatty acid, #946, -oxidation. | IBA-RESPONSE 3 (IBR3) | FUNCTIONS IN: acyl-CoA dehydrogenase activity, oxidoreductase activity | INVOLVED IN: root hair elongation | EXPRESSED IN: 25 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: Acyl-CoA oxidase/dehydrogenase, type1/2, C-terminal , Acyl-CoA oxidase/dehydrogenase, type 1 , Acyl-CoA dehydrogenase/oxidase , Acyl-CoA dehydrogenase/oxidase, N-terminal , Acyl-CoA oxidase/dehydrogenase, central domain , Acyl-CoA dehydrogenase/oxidase C-terminal , Protein kinase-like domain , Acyl-CoA dehydrogenase, N-terminal , Aminoglycoside phosphotransferase | BEST Arabidopsis thaliana protein match is: isovaleryl-CoA-dehydrogenase
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0048767 | ISO | PLAZA Integrative Orthology | root hair elongation | AT3G06810 |
Molecular Function
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0016627 | IEA | InterPro | oxidoreductase activity, acting on the CH-CH group of donors | |
GO:0050660 | IEA | InterPro | flavin adenine dinucleotide binding | |
GO:0003995 | ISO | PLAZA Integrative Orthology | acyl-CoA dehydrogenase activity | AT3G06810 |
Color Legend
Experimental Evidence |
Computational Reviewed Evidence |
Electronic Evidence |
InterPro | Description |
---|---|
IPR037069 | Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily |
IPR036250 | Acyl-CoA dehydrogenase-like, C-terminal |
IPR006091 | Acyl-CoA oxidase/dehydrogenase, central domain |
IPR009075 | Acyl-CoA dehydrogenase/oxidase C-terminal |
IPR041726 | Acyl-CoA dehydrogenase family member 10/11, N-terminal |
IPR011009 | Protein kinase-like domain superfamily |
IPR013786 | Acyl-CoA dehydrogenase/oxidase, N-terminal |
IPR002575 | Aminoglycoside phosphotransferase |
IPR009100 | Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily |
Mapman id | Description |
---|---|
5.7.3.3.2 | Lipid metabolism.lipid degradation.fatty acid degradation.alternative beta-oxidation.monofunctionial hydroxyacyl-CoA dehydrogenase |