Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen05g032860 Solanum pennellii HOM05D004869 ORTHO05D005893 0.0e+00 1689.5 830 100.0
Solyc05g054370.2 Solanum lycopersicum HOM05D004869 ORTHO05D005893 0.0e+00 1676.8 830 99.2
PGSC0003DMG400023436 Solanum tuberosum HOM05D004869 ORTHO05D005893 0.0e+00 1659.4 830 98.3
CAN.G449.73 Capsicum annuum HOM05D004869 ORTHO05D005893 0.0e+00 1533.1 830 89.5
Peaxi162Scf00065g01213 Petunia axillaris HOM05D004869 ORTHO05D005893 0.0e+00 1454.9 830 84.5
Sopen01g027900 Solanum pennellii HOM05D004869 ORTHO05D005893 0.0e+00 1434.1 830 83.3
Solyc01g066310.4 Solanum lycopersicum HOM05D004869 ORTHO05D005893 0.0e+00 1422.1 830 82.7
Nitab4.5_0000695g0140 Nicotiana tabacum HOM05D004869 ORTHO05D005893 0.0e+00 1404.4 830 83.7
Nitab4.5_0008670g0020 Nicotiana tabacum HOM05D004869 ORTHO05D005893 0.0e+00 1399.8 832 82.9
Oeu016255.1 Olea europaea HOM05D004869 ORTHO05D005893 0.0e+00 1352.4 837 78.3
Rhsim04G0226400 Rhododendron simsii HOM05D004869 ORTHO05D005893 0.0e+00 1338.2 830 76.6
Dinv44350 Davidia involucrata HOM05D004869 ORTHO05D005893 0.0e+00 1335.5 828 77.4
Migut.N00074 Erythranthe guttata HOM05D004869 ORTHO05D005893 0.0e+00 1330.9 830 76.0
Cc03_g01500 Coffea canephora HOM05D004869 ORTHO05D005893 0.0e+00 1329.7 831 78.1
Actinidia40299 Actinidia chinensis HOM05D004869 ORTHO05D005893 0.0e+00 1323.9 831 77.3
vmacro08186 Vaccinium macrocarpon HOM05D004869 ORTHO05D005893 0.0e+00 1317.8 852 75.0
Hma1.2p1_1352F.1_g277460 Hydrangea macrophylla HOM05D004869 ORTHO05D005893 0.0e+00 1313.5 831 76.5
Cfa015427 Carpinus fangiana HOM05D004869 ORTHO05D005893 0.0e+00 1302.0 832 75.8
CiPaw.01G145300 Carya illinoinensis HOM05D004869 ORTHO05D005893 0.0e+00 1291.6 831 74.8
Prupe.1G131800 Prunus persica HOM05D004869 ORTHO05D005893 0.0e+00 1288.9 818 75.9
QL06p010392 Quercus lobata HOM05D004869 ORTHO05D005893 0.0e+00 1286.6 832 74.2
GSVIVG01035107001 Vitis vinifera HOM05D004869 ORTHO05D005893 0.0e+00 1285.4 830 75.3
Thecc.04G289100 Theobroma cacao HOM05D004869 ORTHO05D005893 0.0e+00 1274.6 831 73.6
Cpa.g.sc50.161 Carica papaya HOM05D004869 ORTHO05D005893 0.0e+00 1274.2 837 74.2
MD16G1164100 Malus domestica HOM05D004869 ORTHO05D005893 0.0e+00 1272.7 815 75.6
Atru.chr4.2905 Acer truncatum HOM05D004869 ORTHO05D005893 0.0e+00 1270.0 831 73.5
Lj6A681T39 Lonicera japonica HOM05D004869 ORTHO05D005893 0.0e+00 1270.0 831 73.9
HanXRQChr17g0535991 Helianthus annuus HOM05D004869 ORTHO05D005893 0.0e+00 1269.6 830 73.5
VMungo1309G2596 Vigna mungo HOM05D004869 ORTHO05D005893 0.0e+00 1266.9 831 73.6
MD13G1164300 Malus domestica HOM05D004869 ORTHO05D005893 0.0e+00 1266.1 815 75.1
CANSAT78G0178 Cannabis sativa HOM05D004869 ORTHO05D005893 0.0e+00 1265.8 831 73.5
ECA246G3101 Erigeron canadensis HOM05D004869 ORTHO05D005893 0.0e+00 1265.4 831 73.2
RcHm_v2.0_Chr4g0423401 Rosa chinensis HOM05D004869 ORTHO05D005893 0.0e+00 1265.0 816 74.3
TWI73G0801 Tripterygium wilfordii HOM05D004869 ORTHO05D005893 0.0e+00 1263.4 831 73.4
COL.COLO4_13820 Corchorus olitorius HOM05D004869 ORTHO05D005893 0.0e+00 1259.6 832 73.4
MELO3C006684.2 Cucumis melo HOM05D004869 ORTHO05D005893 0.0e+00 1259.6 831 72.7
Glyma.09G042000 Glycine max HOM05D004869 ORTHO05D005893 0.0e+00 1258.0 831 73.0
Potri.010G010448 Populus trichocarpa HOM05D004869 ORTHO05D005893 0.0e+00 1257.7 832 73.3
Potri.008G219000 Populus trichocarpa HOM05D004869 ORTHO05D005893 0.0e+00 1256.5 831 72.9
Sabra10G0006600 Salix brachista HOM05D004869 ORTHO05D005893 0.0e+00 1255.4 837 72.5
Duzib212G0051 Durio zibethinus HOM05D004869 ORTHO05D005893 0.0e+00 1253.8 831 72.8
ClCG05G006260 Citrullus lanatus HOM05D004869 ORTHO05D005893 0.0e+00 1250.3 831 72.4
Sed0001345 Sechium edule HOM05D004869 ORTHO05D005893 0.0e+00 1250.3 840 71.8
CsaV3_3G014880 Cucumis sativus L. HOM05D004869 ORTHO05D005893 0.0e+00 1250.0 831 72.2
Glyma.15G150900 Glycine max HOM05D004869 ORTHO05D005893 0.0e+00 1248.4 831 72.4
THA.LOC104802695 Tarenaya hassleriana HOM05D004869 ORTHO05D005893 0.0e+00 1246.1 830 72.3
Sc19g0005490 Simmondsia chinensis HOM05D004869 ORTHO05D005893 0.0e+00 1245.0 786 75.3
Gorai.005G061800 Gossypium raimondii HOM05D004869 ORTHO05D005893 0.0e+00 1243.8 832 72.7
TWI53G1493 Tripterygium wilfordii HOM05D004869 ORTHO05D005893 0.0e+00 1243.8 831 72.6
Phvul.009G250700 Phaseolus vulgaris HOM05D004869 ORTHO05D005893 0.0e+00 1241.9 835 72.5
Lsat_1_v5_gn_3_21560 Lactuca sativa HOM05D004869 ORTHO05D005893 0.0e+00 1241.5 867 69.7
Lj6g0019427 Lotus japonicus HOM05D004869 ORTHO05D005893 0.0e+00 1238.4 820 73.7
FvH4_4g18700 Fragaria vesca HOM05D004869 ORTHO05D005893 0.0e+00 1236.1 816 72.4
Aqoxy5G00789 Aquilegia oxysepala HOM05D004869 ORTHO05D005893 0.0e+00 1235.3 838 72.7
DCAR_027053 Daucus carota HOM05D004869 ORTHO05D005893 0.0e+00 1232.2 812 73.3
Hund20507 Selenicereus undatus HOM05D004869 ORTHO05D005893 0.0e+00 1231.1 835 71.7
AT3G06810 Arabidopsis thaliana HOM05D004869 ORTHO05D005893 0.0e+00 1230.7 828 70.9
Carub.0003s0635 Capsella rubella HOM05D004869 ORTHO05D005893 0.0e+00 1230.3 828 71.0
Gohir.A02G051000 Gossypium hirsutum HOM05D004869 ORTHO05D005893 0.0e+00 1228.8 831 71.7
arahy.Tifrunner.gnm1.ann1.ZXWI6N Arachis hypogaea HOM05D004869 ORTHO05D005893 0.0e+00 1228.4 832 71.6
Lalb_Chr15g0086081 Lupinus albus HOM05D004869 ORTHO05D005893 0.0e+00 1227.2 832 71.5
Ciclev10004342m.g Citrus clementina HOM05D004869 ORTHO05D005893 0.0e+00 1226.8 830 71.6
AL3G17930 Arabidopsis lyrata HOM05D004869 ORTHO05D005893 0.0e+00 1224.2 828 70.7
Thhalv10020074m.g Eutrema salsugineum HOM05D004869 ORTHO05D005893 0.0e+00 1223.8 828 70.7
FAN12G0537 Fragaria x ananassa HOM05D004869 ORTHO05D005893 0.0e+00 1223.4 825 71.3
Lalb_Chr20g0117401 Lupinus albus HOM05D004869 ORTHO05D005893 0.0e+00 1221.1 831 70.6
BraA05t22852Z Brassica rapa HOM05D004869 ORTHO05D005893 0.0e+00 1219.5 829 70.9
FAN17G0377 Fragaria x ananassa HOM05D004869 ORTHO05D005893 0.0e+00 1219.5 833 70.8
Ciclev10004291m.g Citrus clementina HOM05D004869 ORTHO05D005893 0.0e+00 1219.1 831 71.6
Aa31LG5G17400 Aethionema arabicum HOM05D004869 ORTHO05D005893 0.0e+00 1218.8 828 70.4
Gohir.D02G055900 Gossypium hirsutum HOM05D004869 ORTHO05D005893 0.0e+00 1218.8 832 71.6
PSO210G1050 Papaver somniferum HOM05D004869 ORTHO05D005893 0.0e+00 1215.7 835 71.1
PSO832G2232 Papaver somniferum HOM05D004869 ORTHO05D005893 0.0e+00 1215.7 836 71.3
A05p41290 Brassica napus HOM05D004869 ORTHO05D005893 0.0e+00 1215.3 829 70.7
SGA_v2.0_scaffold119G32706 Striga asiatica HOM05D004869 ORTHO05D005893 0.0e+00 1215.3 842 70.0
C05p60510 Brassica napus HOM05D004869 ORTHO05D005893 0.0e+00 1214.9 829 70.8
FAN12G1313 Fragaria x ananassa HOM05D004869 ORTHO05D005893 0.0e+00 1213.7 855 69.1
BolC5t34705H Brassica oleracea HOM05D004869 ORTHO05D005893 0.0e+00 1211.1 829 70.7
CARHR081430 Cardamine hirsuta HOM05D004869 ORTHO05D005893 0.0e+00 1211.1 828 70.3
EL10Ac3g06663 Beta vulgaris HOM05D004869 ORTHO05D005893 0.0e+00 1209.5 835 68.9
Ca_01910_v3 Cicer arietinum L. HOM05D004869 ORTHO05D005893 0.0e+00 1201.4 810 71.1
Sp3g05780 Schrenkiella parvula HOM05D004869 ORTHO05D005893 0.0e+00 1200.3 828 69.8
CDE11G0521 Ceratophyllum demersum HOM05D004869 ORTHO05D005893 0.0e+00 1194.1 833 69.3
Manes.03G198800 Manihot esculenta HOM05D004869 ORTHO05D005893 0.0e+00 1181.0 831 70.4
Zm00001eb111400 Zea mays HOM05D004869 ORTHO05D005893 0.0e+00 1177.5 835 69.8
Nn3g21544 Nelumbo nucifera HOM05D004869 ORTHO05D005893 0.0e+00 1172.1 775 73.3
ATR0693G241 Amborella trichopoda HOM05D004869 ORTHO05D005893 0.0e+00 1170.2 831 69.0
Os07g0675000 Oryza sativa ssp. japonica HOM05D004869 ORTHO05D005893 0.0e+00 1166.4 834 69.3
AUR62018045 Chenopodium quinoa HOM05D004869 ORTHO05D005893 0.0e+00 1160.2 834 68.5
AUR62015247 Chenopodium quinoa HOM05D004869 ORTHO05D005893 0.0e+00 1154.4 834 68.5
HPP92_003120 Vanilla planifolia HOM05D004869 ORTHO05D005893 0.0e+00 1109.0 837 65.7
TAR365G0733 Trochodendron aralioides HOM05D004869 ORTHO05D005893 0.0e+00 1089.7 839 66.2
MBI18_g44774_MAGBIO Magnolia biondii HOM05D004869 ORTHO05D005893 0.0e+00 1084.7 802 67.5
Ah.04g153720 Amaranthus hybridus HOM05D004869 ORTHO05D005893 0.0e+00 1076.6 860 64.3
Eucgr.B01578 Eucalyptus grandis HOM05D004869 ORTHO05D005893 6.8e-311 1070.5 719 71.1
Pp3c22_4180 Physcomitrium patens HOM05D004869 ORTHO05D005893 8.1e-301 1036.9 830 62.2
Pp3c18_21710 Physcomitrium patens HOM05D004869 ORTHO05D005893 9.3e-297 1023.5 828 61.7
SMO202G0033 Selaginella moellendorffii HOM05D004869 ORTHO05D005893 1.3e-290 1003.0 831 58.6
Haze_01165 Corylus avellana HOM05D004869 ORTHO05D005893 9.3e-289 996.9 847 61.6
arahy.Tifrunner.gnm1.ann1.YH0B1H Arachis hypogaea HOM05D004869 ORTHO05D005893 3.5e-288 995.0 823 62.3
Mapoly0111s0015 Marchantia polymorpha HOM05D004869 ORTHO05D005893 4.0e-284 981.5 825 57.8
AagrBONN_evm.TU.Sc2ySwM_228.2629 Anthoceros agrestis HOM05D004869 ORTHO05D005893 6.1e-256 887.9 714 61.2
SMO169G0300 Selaginella moellendorffii HOM05D004869 ORTHO05D005893 5.2e-255 884.8 835 54.3
CBR_g54445 Chara braunii HOM05D004869 ORTHO05D005893 1.2e-251 873.6 923 51.8
TPR.G26039 Trifolium pratense HOM05D004869 ORTHO05D005893 8.8e-247 857.4 590 68.1
SHI00220 Sapria himalayana HOM05D004869 ORTHO05D005893 4.7e-232 808.5 616 63.8
Medtr2g435800 Medicago truncatula HOM05D004869 ORTHO05D005893 1.0e-226 790.8 576 65.1
DCAR_000477 Daucus carota HOM05D004869 ORTHO05D005893 1.6e-219 766.9 486 74.3
Psat1g156400 Pisum sativum HOM05D004869 ORTHO05D005893 1.1e-215 754.2 571 63.4
unitig_26.g10563 Utricularia gibba HOM05D004869 ORTHO05D005893 4.4e-214 748.8 490 73.5
CSS0035117 Camellia sinensis var. sinensis HOM05D004869 ORTHO05D005893 1.7e-213 746.9 460 79.1
Cre16.g675850 Chlamydomonas reinhardtii HOM05D004869 ORTHO05D005893 3.6e-208 729.2 915 44.9
BcaNung06666 Brassica carinata HOM05D004869 ORTHO05D005893 2.6e-206 723.0 495 72.3
PRCOL_00002960 Prasinoderma coloniale HOM05D004869 ORTHO05D005893 1.1e-175 621.3 801 43.2
Hma1.2p1_0804F.1_g221110 Hydrangea macrophylla HOM05D004869 ORTHO05D005893 9.7e-161 571.6 381 71.7
BcaC05g30559 Brassica carinata HOM05D004869 ORTHO05D005893 8.8e-146 521.9 626 47.9
Oeu031983.1 Olea europaea HOM05D004869 ORTHO05D005893 8.2e-144 515.4 430 60.2
MCO01G041 Micromonas commoda HOM05D004869 ORTHO05D005893 1.4e-130 471.5 427 56.9
MBI18_g37159_MAGBIO Magnolia biondii HOM05D004869 ORTHO05D005893 4.4e-129 466.5 419 62.8
DCAR_023301 Daucus carota HOM05D004869 ORTHO05D005893 3.6e-115 420.2 298 67.1
Cfa024444 Carpinus fangiana HOM05D004869 ORTHO05D005893 2.8e-107 394.0 437 47.1
Cfa022681 Carpinus fangiana HOM05D004869 ORTHO05D005893 2.3e-101 374.4 427 45.9
Medtr2g436030 Medicago truncatula HOM05D004869 ORTHO05D005893 3.1e-98 364.0 219 82.2
QL06p007479 Quercus lobata HOM05D004869 ORTHO05D005893 5.1e-93 346.7 233 74.2
Nn1g04010 Nelumbo nucifera HOM05D004869 ORTHO05D005893 3.2e-87 327.4 190 84.7
Rhsim04G0225600 Rhododendron simsii HOM05D004869 ORTHO05D005893 1.3e-77 295.4 322 51.6
TPR.G13211 Trifolium pratense HOM05D004869 ORTHO05D005893 6.9e-74 283.1 166 85.5
SEGI_30643 Sequoiadendron giganteum HOM05D004869 ORTHO05D005893 3.6e-67 260.8 214 61.7
unitig_26.g10564 Utricularia gibba HOM05D004869 ORTHO05D005893 1.5e-65 255.4 250 52.4
QL93p0200_0027 Quercus lobata HOM05D004869 ORTHO05D005893 2.1e-54 218.4 157 72.0
MCO01G771 Micromonas commoda HOM05D004869 ORTHO05D005893 1.5e-49 202.2 372 35.5
Rhsim04G0225700 Rhododendron simsii HOM05D004869 ORTHO05D005893 1.8e-45 188.7 133 72.9
RcHm_v2.0_Chr3g0480631 Rosa chinensis HOM05D004869 ORTHO05D005893 6.3e-43 180.3 123 69.1
Lsat_1_v5_gn_3_21640 Lactuca sativa HOM05D004869 ORTHO05D005893 3.1e-42 177.9 138 69.6
Rhsim04G0226200 Rhododendron simsii HOM05D004869 ORTHO05D005893 5.0e-40 170.6 150 62.7
RcHm_v2.0_Chr6g0311831 Rosa chinensis HOM05D004869 ORTHO05D005893 1.9e-31 142.1 111 64.9
HanXRQChr01g0024801 Helianthus annuus HOM05D004869 ORTHO05D005893 1.2e-30 139.4 174 43.7
SEGI_32872 Sequoiadendron giganteum HOM05D004869 ORTHO05D005893 2.0e-28 132.1 89 77.5
SEGI_25692 Sequoiadendron giganteum HOM05D004869 ORTHO05D005893 1.8e-26 125.6 111 53.2
SalBow5G3485 Salvia bowleyana HOM05D004869 ORTHO05D005893 1.2e-25 122.9 69 89.9
MBI18_g46557_MAGBIO Magnolia biondii HOM05D004869 ORTHO05D005893 5.0e-24 117.5 93 65.6
Lsat_1_v5_gn_5_23780 Lactuca sativa HOM05D004869 ORTHO05D005893 6.5e-24 117.1 170 40.0
MBI18_g23297_MAGBIO Magnolia biondii HOM05D004869 ORTHO05D005893 8.5e-24 116.7 93 64.5
SMO367G1086 Selaginella moellendorffii HOM05D001528 ORTHO05D006464 1.5e-23 115.9 287 31.7
TPR.G25902 Trifolium pratense HOM05D000002 ORTHO05D000001 1.6e-22 112.5 73 67.1
Haze_26447 Corylus avellana HOM05D001528 ORTHO05D006464 2.1e-22 112.1 407 26.8
PGSC0003DMG400027831 Solanum tuberosum HOM05D004869 ORTHO05D005893 2.0e-20 105.5 59 88.1
AagrBONN_evm.TU.Sc2ySwM_117.3343 Anthoceros agrestis HOM05D001528 ORTHO05D006464 7.5e-20 103.6 389 27.2
BNapus_Darmor_BZH_scaffold_117p00100 Brassica napus HOM05D004869 ORTHO05D005893 1.7e-19 102.4 73 74.0
BolC1t05585H Brassica oleracea HOM05D004869 ORTHO05D005893 4.8e-19 100.9 65 81.5
CAN.G65.194 Capsicum annuum HOM05D001528 ORTHO05D006464 4.8e-19 100.9 317 27.8
Sopen06g029920 Solanum pennellii HOM05D001528 ORTHO05D006464 6.3e-19 100.5 328 27.7
unitig_747.g22005 Utricularia gibba HOM05D001528 ORTHO05D006464 6.3e-19 100.5 330 26.7
MBI15_g19419_MAGBIO Magnolia biondii HOM05D001528 ORTHO05D006464 8.2e-19 100.1 319 27.3
Gorai.006G120500 Gossypium raimondii HOM05D001528 ORTHO05D006464 1.4e-18 99.4 326 27.3
Prupe.6G097600 Prunus persica HOM05D001528 ORTHO05D006464 1.4e-18 99.4 319 26.0
Solyc06g073560.4 Solanum lycopersicum HOM05D001528 ORTHO05D006464 2.4e-18 98.6 317 28.1
TPR.G15436 Trifolium pratense HOM05D004869 ORTHO05D005893 5.3e-18 97.4 73 65.8
Aqoxy4G03235 Aquilegia oxysepala HOM05D001528 ORTHO05D006464 7.0e-18 97.1 400 24.0
MD03G1116100 Malus domestica HOM05D001528 ORTHO05D006464 9.1e-18 96.7 319 26.0
Rhsim08G0043300 Rhododendron simsii HOM05D001528 ORTHO05D006464 3.5e-17 94.7 319 26.6
Cre06.g296400 Chlamydomonas reinhardtii HOM05D001528 ORTHO05D006464 7.7e-17 93.6 334 25.4
Lsat_1_v5_gn_2_97980 Lactuca sativa HOM05D001528 ORTHO05D006464 7.7e-17 93.6 292 27.7
PSO339G5049 Papaver somniferum HOM05D001528 ORTHO05D006464 7.7e-17 93.6 319 26.3
Pp3c3_14940 Physcomitrium patens HOM05D001528 ORTHO05D006464 1.0e-16 93.2 279 28.3
PSO384G1162 Papaver somniferum HOM05D001528 ORTHO05D006464 1.3e-16 92.8 319 26.3
Mapoly0154s0036 Marchantia polymorpha HOM05D001528 ORTHO05D006464 2.2e-16 92.0 294 28.2
PRCOL_00001565 Prasinoderma coloniale HOM05D001528 ORTHO05D006464 2.9e-16 91.7 288 28.5
AUR62025007 Chenopodium quinoa HOM05D001528 ORTHO05D006464 5.0e-16 90.9 317 26.2
BcaC09g47921 Brassica carinata HOM05D004869 ORTHO05D005893 9.4e-15 86.7 57 78.9
Medtr0837s0010 Medicago truncatula HOM05D001528 ORTHO05D006464 9.4e-15 86.7 284 27.1
Cfa026122 Carpinus fangiana HOM05D001528 ORTHO05D006464 2.3e-13 82.0 287 26.1
Hma1.2p1_1662F.1_g296280 Hydrangea macrophylla HOM05D004869 ORTHO05D005893 5.2e-13 80.9 53 69.8
Lsat_1_v5_gn_4_34540 Lactuca sativa HOM05D004869 ORTHO05D005893 5.2e-13 80.9 196 32.7
PRCOL_00007230 Prasinoderma coloniale HOM05D001528 ORTHO05D006464 7.5e-12 77.0 306 24.8
Cfa027299 Carpinus fangiana HOM05D001528 ORTHO05D006464 8.3e-11 73.6 309 23.6
Medtr2057s0010 Medicago truncatula HOM05D001528 ORTHO05D265507 1.2e-09 69.7 212 24.1
PRCOL_00006254 Prasinoderma coloniale HOM05D001528 ORTHO05D006464 1.2e-09 69.7 296 25.0


User provided reference genes

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