Gene: Sopen05g030620

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen05g030620
  • Transcript Identifier Sopen05g030620.1
  • Gene Type Coding gene
  • Location Spenn-ch05 : 74300085-74302819 : negative

Gene Family Information

  • ID HOM05D000255
  • #Genes/#Species 1677/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen05g030620.1

Descriptions

  • Description Belongs to the Rab1 GTPase subfamily. This small GTP-binding protein is required in ER to Golgi transportation. | RAS 5 (RA-5) | FUNCTIONS IN: GTP binding | INVOLVED IN: response to cadmium ion, ER to Golgi vesicle-mediated transport | LOCATED IN: plasma membrane, vacuole | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Ras GTPase , Small GTP-binding protein , Small GTPase , Ras , Ras small GTPase, Rab type | BEST Arabidopsis thaliana protein match is: RAB GTPase homolog 1A
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006888
ISO
PLAZA Integrative Orthologyendoplasmic reticulum to Golgi vesicle-mediated transport AT1G02130
GO:0046686
ISO
PLAZA Integrative Orthologyresponse to cadmium ion AT1G02130

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003924
IEA
InterProGTPase activity
GO:0005525
IEA
InterProGTP binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000139
ISO
PLAZA Integrative OrthologyGolgi membrane AT1G02130
GO:0005773
ISO
PLAZA Integrative Orthologyvacuole AT1G02130
GO:0005886
ISO
PLAZA Integrative Orthologyplasma membrane AT1G02130
GO:0032588
ISO
PLAZA Integrative Orthologytrans-Golgi network membrane AT1G02130

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001806 Small GTPase
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR005225 Small GTP-binding protein domain
Mapman id Description
22.3.4.1.4 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.RAB-GTPase activities.D-class RAB GTPase