Gene: Sopen05g020190

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen05g020190
  • Transcript Identifier Sopen05g020190.1
  • Gene Type Coding gene
  • Location Spenn-ch05 : 44423339-44424970 : positive

Gene Family Information

  • ID HOM05D000824
  • #Genes/#Species 721/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen05g020190.1

Descriptions

  • Description Encodes a homolog of Replication Protein A that is involved in meiosis I in pollen mother cells. rpa1a mutants have a reduced number of class I crossovers. The protein is located in chromatin-associated foci in early leptotene and can be detected in these foci until late pachytene of meiosis I. | replication protein A 1A (RPA1A) | FUNCTIONS IN: DNA binding, nucleic acid binding | INVOLVED IN: in 6 processes | LOCATED IN: nuclear chromatin | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Replication factor-a protein 1 Rpa1 , Nucleic acid-binding, OB-fold-like , Nucleic acid-binding, OB-fold , Nucleic acid binding, OB-fold, tRNA/helicase-type , Replication factor A, C-terminal , Replication factor-A protein 1, N-terminal | BEST Arabidopsis thaliana protein match is: Replication factor-A protein 1-related
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006260
IEA
InterProDNA replication
GO:0006281
IEA
InterProDNA repair
GO:0006310
IEA
InterProDNA recombination
GO:0048232
ISO
PLAZA Integrative Orthologymale gamete generation AT2G06510
GO:0051026
ISO
PLAZA Integrative Orthologychiasma assembly AT2G06510
GO:0007131
ISO
PLAZA Integrative Orthologyreciprocal meiotic recombination AT2G06510
GO:0007140
ISO
PLAZA Integrative Orthologymale meiotic nuclear division Os02g0776800
GO:0007141
ISO
PLAZA Integrative Orthologymale meiosis I AT2G06510
GO:0009555
ISO
PLAZA Integrative Orthologypollen development AT2G06510

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0003677
IEA
InterProDNA binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding Os02g0776800

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
InterPronucleus
GO:0000785
ISO
PLAZA Integrative Orthologychromatin AT2G06510

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR012340 Nucleic acid-binding, OB-fold
IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type
IPR013955 Replication factor A, C-terminal
IPR004591 Replication factor A protein 1
IPR031657 Replication protein A, OB domain
Mapman id Description
13.2.3.5.1 Cell cycle organisation.DNA replication.elongation.single-stranded-DNA binding RPA complex.component RPA1
13.3.5.4.4.1 Cell cycle organisation.mitosis and meiosis.meiotic recombination.DNA strand exchange.RPA presynaptic filament assembly factor complex.component RPA1