Gene: Sopen05g018360

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen05g018360
  • Transcript Identifier Sopen05g018360.1
  • Gene Type Coding gene
  • Location Spenn-ch05 : 37139446-37149713 : positive

Gene Family Information

  • ID HOM05D001362
  • #Genes/#Species 459/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen05g018360.1

Descriptions

  • Description Belongs to 15-member small GTPase gene family, ARF-GAP domain proteins (AGD) | corresponds to AGD3, and is one of four proteins belonging to class 1, together with AGD1, AGD2 and AGD4. The protein contains four domains: BAR domain, PH domain, an ARF-GAP domain, and two Ankyrin repeats. In sfc mutants, the secondary and tertiary veins of cotyledons, leaves, sepals and petals are largely replaced by small segments of discontinuous veins. sfc mutants have exaggerated responses to auxin. | SCARFACE (SFC) | FUNCTIONS IN: ARF GTPase activator activity, phosphoinositide binding | INVOLVED IN: xylem and phloem pattern formation, response to auxin stimulus, phloem or xylem histogenesis, leaf morphogenesis | LOCATED IN: cytosol, trans-Golgi network transport vesicle, plasma membrane | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein , Pleckstrin homology-type , Ankyrin repeat-containing domain , BAR , Pleckstrin homology , Ankyrin repeat | BEST Arabidopsis thaliana protein match is: ARF-GAP domain 1
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010087
ISO
PLAZA Integrative Orthologyphloem or xylem histogenesis AT5G13300
GO:0007010
ISO
PLAZA Integrative Orthologycytoskeleton organization AT5G61980
GO:0010051
ISO
PLAZA Integrative Orthologyxylem and phloem pattern formation AT5G13300
GO:0048768
ISO
PLAZA Integrative Orthologyroot hair cell tip growth AT5G61980
GO:0006897
ISO
PLAZA Integrative Orthologyendocytosis AT5G13300
GO:0009965
ISO
PLAZA Integrative Orthologyleaf morphogenesis AT5G13300
GO:0009733
ISO
PLAZA Integrative Orthologyresponse to auxin AT5G13300

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding
GO:0005096
IEA
InterProGTPase activator activity
GO:0035091
ISO
PLAZA Integrative Orthologyphosphatidylinositol binding AT5G13300

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
IEA
InterProcytoplasm
GO:0030140
ISO
PLAZA Integrative Orthologytrans-Golgi network transport vesicle AT5G13300
GO:0005886
ISO
PLAZA Integrative Orthologyplasma membrane AT5G61980
GO:0030139
ISO
PLAZA Integrative Orthologyendocytic vesicle AT5G61980
GO:0035618
ISO
PLAZA Integrative Orthologyroot hair AT5G61980
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT5G13300

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027267 AH/BAR domain superfamily
IPR002110 Ankyrin repeat
IPR036770 Ankyrin repeat-containing domain superfamily
IPR001164 Arf GTPase activating protein
IPR038508 ArfGAP domain superfamily
IPR001849 Pleckstrin homology domain
IPR004148 BAR domain
IPR035670 Plant AGD1/2/3/4, BAR domain
IPR011993 PH-like domain superfamily
IPR037278 ARFGAP/RecO-like zinc finger
Mapman id Description
22.3.2.3.1 Vesicle trafficking.post-Golgi trafficking.coat protein recruiting.ARF-GTPase activation.class I ARF-GAP protein