Gene: AT5G61980

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G61980
  • Transcript Identifier AT5G61980.1
  • Gene Type Coding gene
  • Location Chr5 : 24894472-24899178 : positive

Gene Family Information

  • ID HOM05D001362
  • #Genes/#Species 459/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G61980.1
  • symbol AGD1
  • uniprot Q9FIT8

Descriptions

  • Description ARF-GAP domain 1
  • Computational description ARF-GAP domain 1 (AGD1); FUNCTIONS IN: ARF GTPase activator activity, zinc ion binding; INVOLVED IN: cytoskeleton organization; LOCATED IN: endocytic vesicle; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164), Pleckstrin homology-type (InterPro:IPR011993), Ankyrin repeat-containing domain (InterPro:IPR020683), BAR (InterPro:IPR004148), Pleckstrin homology (InterPro:IPR001849), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ARF GTPase-activating protein (TAIR:AT5G13300.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0007010
IMP
Gene Ontologycytoskeleton organization1
GO:0048768
IMP
Gene Ontologyroot hair cell tip growth2
GO:0050790
IEA
GOA Databaseregulation of catalytic activity

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0005096
IEA
GOA DatabaseGTPase activator activity
GO:0005096
IEA
InterProGTPase activator activity
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0030139
IDA
Gene Ontologyendocytic vesicle1
GO:0005886
IDA
Gene Ontologyplasma membrane2
GO:0035618
IDA
Gene Ontologyroot hair2
GO:0005768
IEA
GOA Databaseendosome
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
IEA
InterProcytoplasm

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001849 Pleckstrin homology domain
IPR027267 AH/BAR domain superfamily
IPR035670 Plant AGD1/2/3/4, BAR domain
IPR011993 PH-like domain superfamily
IPR036770 Ankyrin repeat-containing domain superfamily
IPR038508 ArfGAP domain superfamily
IPR001164 Arf GTPase activating protein
IPR002110 Ankyrin repeat
IPR004148 BAR domain
IPR037278 ARFGAP/RecO-like zinc finger
Mapman id Description
22.3.2.3.1 Vesicle trafficking.post-Golgi trafficking.coat protein recruiting.ARF-GTPase activation.class I ARF-GAP protein