Gene: Sopen05g018350

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen05g018350
  • Transcript Identifier Sopen05g018350.1
  • Gene Type Coding gene
  • Location Spenn-ch05 : 37076828-37082974 : positive

Gene Family Information

  • ID HOM05D000512
  • #Genes/#Species 1048/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen05g018350.1

Descriptions

  • Description A member of mei2-like gene family, predominantly plant-based family of genes encoding RNA binding proteins with characteristic presence of a highly conserved RNA binding motif first described in the mei2 gene of the fission yeast S. pombe. In silico analyses reveal nine mei2 -like genes in A. thaliana. They were grouped into four distinct clades, based on overall sequence similarity and subfamily-specific sequence elements. AML1 is a member of two sister clades of mei2-like gene family, AML1 through AML5 and belongs to the clade named ALM14. AML1 is expressed during early embryo development, particularly along embryonic axis at torpedo stage, in shoot apex (weaker expression) and in the organogenic regions of floral apices. | MEI2-like protein 1 (ML1) | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , RNA recognition motif 2 , Nucleotide-binding, alpha-beta plait | BEST Arabidopsis thaliana protein match is: MEI2-like 4
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0045927
ISO
PLAZA Integrative Orthologypositive regulation of growth AT5G07290
GO:0045836
ISO
PLAZA Integrative Orthologypositive regulation of meiotic nuclear division AT5G07290
GO:0048507
ISO
PLAZA Integrative Orthologymeristem development AT5G07290

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G61960
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT5G07290

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR034453 MEI2-like, RNA recognition motif 1
IPR035979 RNA-binding domain superfamily
IPR007201 Mei2-like, C-terminal RNA recognition motif
IPR034454 MEI2-like, RNA recognition motif 3
IPR000504 RNA recognition motif domain
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
Mapman id Description
35.1 not assigned.annotated