Gene: Sopen05g018350
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen05g018350
- Transcript Identifier Sopen05g018350.1
- Gene Type Coding gene
- Location Spenn-ch05 : 37076828-37082974 : positive
Gene Family Information
- ID HOM05D000512
- #Genes/#Species 1048/99
- Phylogenetic origin
- ID ORTHO05D000861
- #Genes/#Species 579/99
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Sopen05g018350.1
Descriptions
- Description A member of mei2-like gene family, predominantly plant-based family of genes encoding RNA binding proteins with characteristic presence of a highly conserved RNA binding motif first described in the mei2 gene of the fission yeast S. pombe. In silico analyses reveal nine mei2 -like genes in A. thaliana. They were grouped into four distinct clades, based on overall sequence similarity and subfamily-specific sequence elements. AML1 is a member of two sister clades of mei2-like gene family, AML1 through AML5 and belongs to the clade named ALM14. AML1 is expressed during early embryo development, particularly along embryonic axis at torpedo stage, in shoot apex (weaker expression) and in the organogenic regions of floral apices. | MEI2-like protein 1 (ML1) | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , RNA recognition motif 2 , Nucleotide-binding, alpha-beta plait | BEST Arabidopsis thaliana protein match is: MEI2-like 4
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0045927 | ISO | PLAZA Integrative Orthology | positive regulation of growth | AT5G07290 |
GO:0045836 | ISO | PLAZA Integrative Orthology | positive regulation of meiotic nuclear division | AT5G07290 |
GO:0048507 | ISO | PLAZA Integrative Orthology | meristem development | AT5G07290 |
Molecular Function
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0003676 | IEA | InterPro | nucleic acid binding | |
GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT5G61960 |
GO:0003729 | ISO | PLAZA Integrative Orthology | mRNA binding | AT5G07290 |
Color Legend
Experimental Evidence |
Computational Reviewed Evidence |
Electronic Evidence |
InterPro | Description |
---|---|
IPR034453 | MEI2-like, RNA recognition motif 1 |
IPR035979 | RNA-binding domain superfamily |
IPR007201 | Mei2-like, C-terminal RNA recognition motif |
IPR034454 | MEI2-like, RNA recognition motif 3 |
IPR000504 | RNA recognition motif domain |
IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily |
Mapman id | Description |
---|---|
35.1 | not assigned.annotated |