Gene: Sopen05g007810

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen05g007810
  • Transcript Identifier Sopen05g007810.1
  • Gene Type Coding gene
  • Location Spenn-ch05 : 6628805-6633887 : positive

Gene Family Information

  • ID HOM05D000528
  • #Genes/#Species 1033/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen05g007810.1

Descriptions

  • Description Encodes a GDP/GTP exchange factor for small G-proteins of the ADP ribosylation factor (RAF) class, and as regulator of intracellular trafficking. Homologous to Sec7p and YEC2 from yeast. Involved in the specification of apical-basal pattern formation. Essential for cell division, expansion and adhesion. It appears that heteotypic binding between the DCB and C-terminal domains of two GNOM proteins is required for membrane association, however, GNOM appears to exist predominantly as a heterodimer formed through DCB-DCB interactions. | GNOM (GN) | FUNCTIONS IN: protein homodimerization activity, GTP:GDP antiporter activity | INVOLVED IN: in 13 processes | LOCATED IN: intracellular | EXPRESSED IN: 25 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: SEC7-like | BEST Arabidopsis thaliana protein match is: GNOM-like 1 ., SEC7-like
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0070417
ISO
PLAZA Integrative Orthologycellular response to cold AT1G13980
GO:0010540
ISO
PLAZA Integrative Orthologybasipetal auxin transport AT1G13980
GO:0001736
ISO
PLAZA Integrative Orthologyestablishment of planar polarity AT1G13980
GO:0009942
ISO
PLAZA Integrative Orthologylongitudinal axis specification AT1G13980
GO:0048209
ISO
PLAZA Integrative Orthologyregulation of vesicle targeting, to, from or within Golgi AT1G13980
GO:0006897
ISO
PLAZA Integrative Orthologyendocytosis AT1G13980
GO:0048765
ISO
PLAZA Integrative Orthologyroot hair cell differentiation AT1G13980
GO:0009880
ISO
PLAZA Integrative Orthologyembryonic pattern specification AT1G13980
GO:0010274
ISO
PLAZA Integrative Orthologyhydrotropism AT1G13980
GO:0010311
ISO
PLAZA Integrative Orthologylateral root formation AT1G13980
GO:0071555
ISO
PLAZA Integrative Orthologycell wall organization AT1G13980
GO:0032509
ISO
PLAZA Integrative Orthologyendosome transport via multivesicular body sorting pathway AT1G13980
GO:0016192
ISO
PLAZA Integrative Orthologyvesicle-mediated transport AT1G13980
GO:0009826
ISO
PLAZA Integrative Orthologyunidimensional cell growth AT1G13980
GO:0007155
ISO
PLAZA Integrative Orthologycell adhesion AT1G13980
GO:0000911
ISO
PLAZA Integrative Orthologycytokinesis by cell plate formation AT1G13980
GO:0009793
ISO
PLAZA Integrative Orthologyembryo development ending in seed dormancy AT1G13980
GO:0010087
ISO
PLAZA Integrative Orthologyphloem or xylem histogenesis AT1G13980
GO:0032012
IEA
InterProregulation of ARF protein signal transduction

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0042802
ISO
PLAZA Integrative Orthologyidentical protein binding AT1G13980
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G13980
GO:0010292
ISO
PLAZA Integrative OrthologyGTP:GDP antiporter activity AT1G13980
GO:0042803
ISO
PLAZA Integrative Orthologyprotein homodimerization activity AT1G13980
GO:0005085
IEA
InterProguanyl-nucleotide exchange factor activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005886
ISO
PLAZA Integrative Orthologyplasma membrane AT1G13980
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT1G13980
GO:0005768
ISO
PLAZA Integrative Orthologyendosome AT1G13980

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000904 Sec7 domain
IPR035999 Sec7 domain superfamily
IPR016024 Armadillo-type fold
IPR032691 Guanine nucleotide exchange factor, N-terminal
IPR023394 Sec7, C-terminal domain superfamily
Mapman id Description
22.3.2.2.1 Vesicle trafficking.post-Golgi trafficking.coat protein recruiting.ARF-GTPase guanyl-nucleotide exchange.ARF-GEF factor (GBF)