Gene: Sopen05g004200

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen05g004200
  • Transcript Identifier Sopen05g004200.1
  • Gene Type Coding gene
  • Location Spenn-ch05 : 2975714-2976520 : positive

Gene Family Information

  • ID HOM05D001299
  • #Genes/#Species 484/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen05g004200.1

Descriptions

  • Description Encodes a ribose 5-phosphate isomerase involved in the formation of uridine used for the synthesis of UDP-sugars. Mutants of this gene are affected in cellulose biosynthesis. | RADIAL SWELLING 10 (RSW10) | FUNCTIONS IN: ribose-5-phosphate isomerase activity | INVOLVED IN: uridine biosynthetic process, response to karrikin, cellulose biosynthetic process | LOCATED IN: cytoplasm | EXPRESSED IN: 26 plant structures | EXPRESSED DURING: 14 growth stages | CONTAINS InterPro DOMAIN/s: Ribose 5-phosphate isomerase, type A | BEST Arabidopsis thaliana protein match is: ribose-5-phosphate isomerase 2
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009052
IEA
InterPropentose-phosphate shunt, non-oxidative branch
GO:0008219
ISO
PLAZA Integrative Orthologycell death AT2G01290
GO:0080167
ISO
PLAZA Integrative Orthologyresponse to karrikin AT1G71100
GO:0030244
ISO
PLAZA Integrative Orthologycellulose biosynthetic process AT1G71100
GO:0010228
ISO
PLAZA Integrative Orthologyvegetative to reproductive phase transition of meristem AT2G01290
GO:0046109
ISO
PLAZA Integrative Orthologyuridine biosynthetic process AT1G71100

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004751
IEA
InterProribose-5-phosphate isomerase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT1G71100
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT1G71100

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR004788 Ribose 5-phosphate isomerase, type A
IPR037171 NagB/RpiA transferase-like
Mapman id Description
3.9.2.1 Carbohydrate metabolism.oxidative pentose phosphate pathway.non-oxidative phase.ribose 5-phosphate isomerase