Gene: Sopen04g017990

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen04g017990
  • Transcript Identifier Sopen04g017990.1
  • Gene Type Coding gene
  • Location Spenn-ch04 : 43229523-43232394 : positive

Gene Family Information

  • ID HOM05D001201
  • #Genes/#Species 520/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen04g017990.1

Descriptions

  • Description Encodes a DNA glycosylase DEMETER (DME). Responsible for endosperm maternal-allele-specific hypomethylation at the MEDEA (MEA) gene. DME can excise 5-methylcytosine in vitro and when expressed in E. coli. DME establishes MEA imprinting by removing 5-methylcytosine to activate the maternal allele. | DEMETER (DME) | CONTAINS InterPro DOMAIN/s: DNA glycosylase , Endonuclease III-like, iron-sulphur cluster loop motif , HhH-GPD domain | BEST Arabidopsis thaliana protein match is: demeter-like 1
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006281
IEA
InterProDNA repair
GO:0080111
IEA
InterProDNA demethylation
GO:0006284
ISO
PLAZA Homology (enrichment)base-excision repair HOM05D001201
GO:0010150
ISO
PLAZA Integrative Orthologyleaf senescence AT4G34060
GO:0010216
ISO
PLAZA Integrative Orthologymaintenance of DNA methylation AT4G34060

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003824
IEA
InterProcatalytic activity
GO:0019104
IEA
InterProDNA N-glycosylase activity
GO:0035514
IEA
InterProDNA demethylase activity
GO:0051747
ISO
PLAZA Integrative Orthologycytosine C-5 DNA demethylase activity AT4G34060
GO:0051539
ISO
PLAZA Homology (enrichment)4 iron, 4 sulfur cluster binding HOM05D001201

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT4G34060

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR011257 DNA glycosylase
IPR044811 DNA glycosylase, plant
Mapman id Description
35.1 not assigned.annotated