Gene: Sopen04g003930

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen04g003930
  • Transcript Identifier Sopen04g003930.1
  • Gene Type Coding gene
  • Location Spenn-ch04 : 2620378-2624271 : negative

Gene Family Information

  • ID HOM05D004582
  • #Genes/#Species 158/95
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen04g003930.1

Descriptions

  • Description SPT4 homolog 2 (SPT42) | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Transcription initiation Spt4-like | BEST Arabidopsis thaliana protein match is: Transcription initiation Spt4-like protein .
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006355
IEA
InterProregulation of transcription, DNA-templated
GO:0032786
IEA
InterPropositive regulation of DNA-templated transcription, elongation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008270
IEA
InterProzinc ion binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G63670

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
InterPronucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR009287 Transcription initiation Spt4
IPR022800 Spt4/RpoE2 zinc finger
IPR029040 RNA polymerase subunit RPABC4/transcription elongation factor Spt4
IPR038510 Spt4 superfamily
Mapman id Description
15.3.5.3.1 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription elongation.SPT4-SPT5 transcription elongation complex.component SPT4