Gene: AT5G63670

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G63670
  • Transcript Identifier AT5G63670.1
  • Gene Type Coding gene
  • Location Chr5 : 25488012-25489247 : positive

Gene Family Information

  • ID HOM05D004582
  • #Genes/#Species 158/95
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G63670.1
  • symbol SPT42
  • Alias SPT4-2
  • uniprot Q94C60

Descriptions

  • Description SPT4 homolog 2
  • Computational description SPT4 homolog 2 (SPT42); FUNCTIONS IN: positive transcription elongation factor activity, zinc ion binding; INVOLVED IN: positive regulation of transcription, N-terminal protein myristoylation; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription initiation Spt4 (InterPro:IPR009287), Transcription initiation Spt4-like (InterPro:IPR016046); BEST Arabidopsis thaliana protein match is: Transcription initiation Spt4-like protein (TAIR:AT5G08565.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0032786
IEA
Gene Ontologypositive regulation of DNA-templated transcription, elongation
GO:0032786
IEA
InterPropositive regulation of DNA-templated transcription, elongation
GO:0006325
IBA
Gene Ontologychromatin organization1
GO:0034243
IBA
Gene Ontologyregulation of transcription elongation from RNA polymerase II promoter1
GO:0006397
IBA
Gene OntologymRNA processing1
GO:0006355
IEA
GOA Databaseregulation of transcription, DNA-templated
GO:0006355
IEA
InterProregulation of transcription, DNA-templated

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008270
IEA
Gene Ontologyzinc ion binding
GO:0008270
IEA
InterProzinc ion binding
GO:0005515
IPI
Gene Ontologyprotein binding2
GO:0000993
IBA
Gene OntologyRNA polymerase II complex binding1
GO:0046872
IEA
GOA Databasemetal ion binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0005634
IEA
InterPronucleus
GO:0032044
IBA
Gene OntologyDSIF complex1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR029040 RNA polymerase subunit RPABC4/transcription elongation factor Spt4
IPR009287 Transcription initiation Spt4
IPR038510 Spt4 superfamily
IPR022800 Spt4/RpoE2 zinc finger
Mapman id Description
15.3.5.3.1 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription elongation.SPT4-SPT5 transcription elongation complex.component SPT4