Gene: Sopen02g037780

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen02g037780
  • Transcript Identifier Sopen02g037780.2
  • Gene Type Coding gene
  • Location Spenn-ch02 : 58575508-58593084 : positive

Gene Family Information

  • ID HOM05D001902
  • #Genes/#Species 346/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen02g037780.2

Descriptions

  • Description Encodes a polycomb group protein. Forms part of a large protein complex that can include VRN2 (VERNALIZATION 2), VIN3 (VERNALIZATION INSENSITIVE 3) and polycomb group proteins FERTILIZATION INDEPENDENT ENDOSPERM (FIE) and CURLY LEAF (CLF). The complex has a role in establishing FLC (FLOWERING LOCUS C) repression during vernalization. Performs a partially redundant role to MEA in controlling seed initiation by helping to suppress central cell nucleusendosperm proliferation within the FG. | SWINGER (SWN) | CONTAINS InterPro DOMAIN/s: SANT, DNA-binding , SET domain | BEST Arabidopsis thaliana protein match is: SET domain-containing protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0070734
ISO
PLAZA Integrative Orthologyhistone H3-K27 methylation AT2G23380
GO:0010228
ISO
PLAZA Integrative Orthologyvegetative to reproductive phase transition of meristem AT2G23380
GO:0016571
ISO
PLAZA Integrative Orthologyhistone methylation AT2G23380
GO:0048586
ISO
PLAZA Integrative Orthologyregulation of long-day photoperiodism, flowering Os06g0275500
GO:0009909
ISO
PLAZA Integrative Orthologyregulation of flower development AT2G23380
GO:0009737
ISO
PLAZA Integrative Orthologyresponse to abscisic acid AT2G23380
GO:0006349
ISO
PLAZA Integrative Orthologyregulation of gene expression by genetic imprinting AT2G23380
GO:1990110
ISO
PLAZA Integrative Orthologycallus formation AT2G23380
GO:0009965
ISO
PLAZA Integrative Orthologyleaf morphogenesis AT2G23380
GO:0045857
ISO
PLAZA Integrative Orthologynegative regulation of molecular function, epigenetic AT2G23380
GO:0006342
ISO
PLAZA Integrative Orthologychromatin silencing Os06g0275500
GO:0006355
ISO
PLAZA Integrative Orthologyregulation of transcription, DNA-templated AT2G23380
GO:1900055
ISO
PLAZA Integrative Orthologyregulation of leaf senescence AT2G23380
GO:0009294
ISO
PLAZA Integrative OrthologyDNA mediated transformation AT2G23380

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0018024
ISO
PLAZA Integrative Orthologyhistone-lysine N-methyltransferase activity AT2G23380
GO:0003727
ISO
PLAZA Integrative Orthologysingle-stranded RNA binding AT2G23380
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT2G23380
GO:0031519
IEA
InterProPcG protein complex
GO:0005677
ISO
PLAZA Integrative Orthologychromatin silencing complex Os06g0275500

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001005 SANT/Myb domain
IPR025778 Histone-lysine N-methyltransferase
IPR001214 SET domain
IPR033467 Tesmin/TSO1-like CXC domain
IPR041355 Pre-SET CXC domain
Mapman id Description
12.3.3.2.1.1.4 Chromatin organisation.post-translational histone modification.histone lysine methylation.class-I histone methyltransferase activities.PRC2 histone methylation complex.VRN/FIS/EMF core subcomplexes.catalytic component CLF/SWN/MEA