Gene: AT2G23380

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT2G23380
  • Transcript Identifier AT2G23380.1
  • Gene Type Coding gene
  • Location Chr2 : 9955570-9960117 : positive

Gene Family Information

  • ID HOM05D001902
  • #Genes/#Species 346/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT2G23380.1
  • symbol CLF
  • Alias ICU1,INCURVATA 1,SDG1,SETDOMAIN GROUP 1,SET1,SETDOMAIN 1
  • full_name CURLY LEAF
  • uniprot P93831

Descriptions

  • Description SET domain-containing protein
  • Computational description CURLY LEAF (CLF); FUNCTIONS IN: protein binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 7 processes; LOCATED IN: chloroplast; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214); BEST Arabidopsis thaliana protein match is: SET domain-containing protein (TAIR:AT4G02020.1); Has 5951 Blast hits to 5285 proteins in 534 species: Archae - 0; Bacteria - 530; Metazoa - 2584; Fungi - 730; Plants - 989; Viruses - 16; Other Eukaryotes - 1102 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009737
IGI
Gene Ontologyresponse to abscisic acid1
GO:0006342
IEA
GOA Databasechromatin silencing
GO:0048586
IEA
GOA Databaseregulation of long-day photoperiodism, flowering
GO:0070734
IEA
GOA Databasehistone H3-K27 methylation
GO:0070734
IMP
Gene Ontologyhistone H3-K27 methylation2
GO:0030154
IEA
GOA Databasecell differentiation
GO:0032259
IEA
GOA Databasemethylation
GO:0009908
IEA
GOA Databaseflower development
GO:0006325
IEA
GOA Databasechromatin organization
GO:1900055
IGI
Gene Ontologyregulation of leaf senescence1
GO:1990110
IGI
Gene Ontologycallus formation3
GO:0045857
IMP
Gene Ontologynegative regulation of molecular function, epigenetic4
GO:0010228
IMP
Gene Ontologyvegetative to reproductive phase transition of meristem5
GO:0009909
IMP
Gene Ontologyregulation of flower development2
GO:0006355
IMP
Gene Ontologyregulation of transcription, DNA-templated2
GO:0009294
IMP
Gene OntologyDNA mediated transformation6
GO:0016571
IMP
Gene Ontologyhistone methylation7
GO:0006349
IMP
Gene Ontologyregulation of gene expression by genetic imprinting7
GO:0009965
IMP
Gene Ontologyleaf morphogenesis8

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IPI
Gene Ontologyprotein binding9
GO:0005515
IEA
InterProprotein binding
GO:0008168
IEA
GOA Databasemethyltransferase activity
GO:0016740
IEA
GOA Databasetransferase activity
GO:0018024
IEA
GOA Databasehistone-lysine N-methyltransferase activity
GO:0018024
IDA
Gene Ontologyhistone-lysine N-methyltransferase activity10
GO:0003727
IDA
Gene Ontologysingle-stranded RNA binding11

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0031519
IEA
Gene OntologyPcG protein complex
GO:0031519
IEA
InterProPcG protein complex
GO:0005677
IEA
GOA Databasechromatin silencing complex
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
ISM
Gene Ontologynucleus2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR041355 Pre-SET CXC domain
IPR001214 SET domain
IPR033467 Tesmin/TSO1-like CXC domain
IPR025778 Histone-lysine N-methyltransferase
Mapman id Description
12.3.3.2.1.1.4 Chromatin organisation.post-translational histone modification.histone lysine methylation.class-I histone methyltransferase activities.PRC2 histone methylation complex.VRN/FIS/EMF core subcomplexes.catalytic component CLF/SWN/MEA