Gene: Sopen01g052620

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen01g052620
  • Transcript Identifier Sopen01g052620.1
  • Gene Type Coding gene
  • Location Spenn-ch01 : 108029738-108036357 : positive

Gene Family Information

  • ID HOM05D004284
  • #Genes/#Species 166/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen01g052620.1

Descriptions

  • Description FMN-linked oxidoreductases superfamily protein | FUNCTIONS IN: tRNA dihydrouridine synthase activity, FAD binding, catalytic activity, zinc ion binding, nucleic acid binding | INVOLVED IN: oxidation reduction, tRNA processing, metabolic process | LOCATED IN: vacuole | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type , Aldolase-type TIM barrel , tRNA-dihydrouridine synthase , tRNA-dihydrouridine synthase, conserved site | BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein
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Functional Annotation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003824
IEA
InterProcatalytic activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005773
ISO
PLAZA Integrative Orthologyvacuole AT4G38890

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR035587 DUS-like, FMN-binding domain
IPR041367 E3 ligase, CCCH-type zinc finger
IPR013785 Aldolase-type TIM barrel
Mapman id Description
16.5.4.1 RNA processing.RNA modification.dihydrouridylation.tRNA dihydrouridine synthase