Gene: AT4G38890

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G38890
  • Transcript Identifier AT4G38890.1
  • Gene Type Coding gene
  • Location Chr4 : 18135909-18139100 : negative

Gene Family Information

  • ID HOM05D004284
  • #Genes/#Species 166/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G38890.1
  • uniprot Q9T0J6

Descriptions

  • Description FMN-linked oxidoreductases superfamily protein
  • Computational description FMN-linked oxidoreductases superfamily protein; FUNCTIONS IN: tRNA dihydrouridine synthase activity, FAD binding, catalytic activity, zinc ion binding, nucleic acid binding; INVOLVED IN: oxidation reduction, tRNA processing, metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), Aldolase-type TIM barrel (InterPro:IPR013785), tRNA-dihydrouridine synthase (InterPro:IPR001269), tRNA-dihydrouridine synthase, conserved site (InterPro:IPR018517); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT3G49640.1); Has 11364 Blast hits to 11268 proteins in 2588 species: Archae - 15; Bacteria - 7817; Metazoa - 496; Fungi - 531; Plants - 173; Viruses - 0; Other Eukaryotes - 2332 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0002943
IEA
GOA DatabasetRNA dihydrouridine synthesis
GO:0008033
IEA
GOA DatabasetRNA processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0050660
IEA
Gene Ontologyflavin adenine dinucleotide binding
GO:0017150
IEA
GOA DatabasetRNA dihydrouridine synthase activity
GO:0017150
IBA
Gene OntologytRNA dihydrouridine synthase activity1
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0016491
IEA
GOA Databaseoxidoreductase activity
GO:0003824
IEA
GOA Databasecatalytic activity
GO:0003824
IEA
InterProcatalytic activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISM
Gene Ontologynucleus
GO:0005773
IDA
GOA Databasevacuole
GO:0005773
HDA
Gene Ontologyvacuole2
GO:0005829
RCA
Gene Ontologycytosol3

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR013785 Aldolase-type TIM barrel
IPR035587 DUS-like, FMN-binding domain
Mapman id Description
16.5.4.1 RNA processing.RNA modification.dihydrouridylation.tRNA dihydrouridine synthase