Gene: Sopen01g049310

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen01g049310
  • Transcript Identifier Sopen01g049310.1
  • Gene Type Coding gene
  • Location Spenn-ch01 : 105356011-105359565 : negative

Gene Family Information

  • ID HOM05D001719
  • #Genes/#Species 376/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen01g049310.1

Descriptions

  • Description Radical SAM superfamily protein | FUNCTIONS IN: iron-sulfur cluster binding, catalytic activity, RNA methyltransferase activity | INVOLVED IN: rRNA processing | LOCATED IN: cytoplasm | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 14 growth stages | CONTAINS InterPro DOMAIN/s: Ribosomal RNA large subunit methyltransferase RlmN | , Radical SAM | BEST Arabidopsis thaliana protein match is: Radical SAM superfamily protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006364
IEA
InterProrRNA processing
GO:0030488
IEA
InterProtRNA methylation
GO:0070475
IEA
InterProrRNA base methylation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008173
IEA
InterProRNA methyltransferase activity
GO:0003824
IEA
InterProcatalytic activity
GO:0051536
IEA
InterProiron-sulfur cluster binding

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr
IPR007197 Radical SAM
IPR027492 Dual-specificity RNA methyltransferase RlmN
IPR013785 Aldolase-type TIM barrel
IPR040072 Methyltransferase (Class A)
Mapman id Description
35.1 not assigned.annotated