Gene: Sopen01g044490

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen01g044490
  • Transcript Identifier Sopen01g044490.1
  • Gene Type Coding gene
  • Location Spenn-ch01 : 101361941-101365102 : negative

Gene Family Information

  • ID HOM05D001642
  • #Genes/#Species 393/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen01g044490.1

Descriptions

  • Description FACT complex subunit SPT16 (Facilitates chromatin transcription complex subunit SPT16) - Oryza sativa (Rice), encodes a component of the FAcilitates Chromatin Transcription (FACT) complex, SPT16.Along with SSRP1 binds to the promoter of FLC. | global transcription factor C (SPT16) | INVOLVED IN: vegetative to reproductive phase transition of meristem | LOCATED IN: nuclear euchromatin, FACT complex, nucleolus, nucleus | EXPRESSED IN: 27 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1747, eukaryote , Peptidase M24, structural domain , FACT complex subunit Spt16p/Cdc68p | BEST Arabidopsis thaliana protein match is: GTC2
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010228
ISO
PLAZA Integrative Orthologyvegetative to reproductive phase transition of meristem AT4G10710

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0035101
IEA
InterProFACT complex
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT4G10710
GO:0000791
ISO
PLAZA Integrative Orthologyeuchromatin AT4G10710
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT4G10710

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036005 Creatinase/aminopeptidase-like
IPR000994 Peptidase M24
IPR013719 Domain of unknown function DUF1747
IPR029148 FACT complex subunit Spt16, N-terminal lobe domain
IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal
IPR033825 FACT complex subunit Spt16, peptidase M24-like domain
IPR040258 FACT complex subunit Spt16
IPR013953 FACT complex subunit Spt16 domain
IPR011993 PH-like domain superfamily
Mapman id Description
12.2.2.1 Chromatin organisation.histone chaperone activities.FACT histone chaperone complex.component SPT16