Gene: Sopen01g035420

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen01g035420
  • Transcript Identifier Sopen01g035420.1
  • Gene Type Coding gene
  • Location Spenn-ch01 : 93473072-93479560 : negative

Gene Family Information

  • ID HOM05D000064
  • #Genes/#Species 3993/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen01g035420.1

Descriptions

  • Description Encodes a GTP-binding protein with similarity to yeast YPT6 . RAB6 can complement the yeast YTP mutant. | RAB6A | FUNCTIONS IN: protein binding, GTP binding | INVOLVED IN: secretion by cell | LOCATED IN: plasma membrane, membrane fraction | EXPRESSED IN: 25 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: Ras GTPase , Small GTP-binding protein , Small GTPase , Ras , Ras small GTPase, Rab type , Rab6-related | BEST Arabidopsis thaliana protein match is: RAB GTPase homolog H1E
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006887
ISO
PLAZA Integrative Orthologyexocytosis AT2G44610
GO:0052324
ISO
PLAZA Integrative Orthologyplant-type cell wall cellulose biosynthetic process AT2G44610
GO:0001558
ISO
PLAZA Integrative Orthologyregulation of cell growth AT2G44610
GO:0032940
ISO
PLAZA Integrative Orthologysecretion by cell AT2G44610

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003924
IEA
InterProGTPase activity
GO:0005525
IEA
InterProGTP binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT2G44610

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000139
ISO
PLAZA Integrative OrthologyGolgi membrane AT2G44610
GO:0005794
ISO
PLAZA Integrative OrthologyGolgi apparatus AT2G44610
GO:0005774
ISO
PLAZA Integrative Orthologyvacuolar membrane AT2G44610
GO:0005886
ISO
PLAZA Integrative Orthologyplasma membrane AT2G44610
GO:0005802
ISO
PLAZA Integrative Orthologytrans-Golgi network AT2G44610
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT2G44610
GO:0005768
ISO
PLAZA Integrative Orthologyendosome AT2G44610
GO:0016020
ISO
PLAZA Integrative Orthologymembrane AT2G44610
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT2G44610

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR001806 Small GTPase
IPR005225 Small GTP-binding protein domain
Mapman id Description
22.3.4.1.8 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.RAB-GTPase activities.H-class RAB GTPase