Gene: Sopen01g030830
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen01g030830
- Transcript Identifier Sopen01g030830.2
- Gene Type Coding gene
- Location Spenn-ch01 : 88179413-88187513 : negative
Gene Family Information
- ID HOM05D000159
- #Genes/#Species 2316/100
- Phylogenetic origin
- ID ORTHO05D005826
- #Genes/#Species 151/93
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Sopen01g030830.2
Descriptions
- Description Encodes a member of the Squamosa Binding Protein family of transcriptional regulators. SPL7 is expressed highly in roots and appears to play a role in copper homeostasis. Mutants are hypersensitive to copper deficient conditions and display a retarded growth phenotype. SPL7 binds to the promoter of the copper responsive miRNAs miR398b and miR389c. | squamosa promoter binding protein-like 7 (SPL7) | FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity | INVOLVED IN: copper ion homeostasis, regulation of transcription | LOCATED IN: nucleus | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box | BEST Arabidopsis thaliana protein match is: squamosa promoter binding protein-like 1 .
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0006355 | ISO | PLAZA Integrative Orthology | regulation of transcription, DNA-templated | AT5G18830 |
GO:0035874 | ISO | PLAZA Integrative Orthology | cellular response to copper ion starvation | AT5G18830 |
GO:0048638 | ISO | PLAZA Integrative Orthology | regulation of developmental growth | AT5G18830 |
GO:0055070 | ISO | PLAZA Integrative Orthology | copper ion homeostasis | AT5G18830 |
Molecular Function
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0003677 | IEA | InterPro | DNA binding | |
GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT5G18830 |
GO:0042803 | ISO | PLAZA Integrative Orthology | protein homodimerization activity | AT5G18830 |
GO:0000976 | ISO | PLAZA Integrative Orthology | transcription cis-regulatory region binding | AT5G18830 |
Cellular Component
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0005634 | IEA | InterPro | nucleus | |
GO:0016607 | ISO | PLAZA Integrative Orthology | nuclear speck | AT5G18830 |
Color Legend
Experimental Evidence |
Computational Reviewed Evidence |
Electronic Evidence |
Mapman id | Description |
---|---|
15.5.18 | RNA biosynthesis.transcriptional regulation.transcription factor (SBP) |
25.4.3.1.1 | Nutrient uptake.metal homeostasis.copper.regulation.copper homeostasis regulator (SPL7) |