Gene: Sopen01g030240
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen01g030240
- Transcript Identifier Sopen01g030240.1
- Gene Type Coding gene
- Location Spenn-ch01 : 87423675-87433067 : negative
Gene Family Information
- ID HOM05D000002
- #Genes/#Species 26594/98
- Phylogenetic origin
- ID ORTHO05D000001
- #Genes/#Species 28434/96
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
- Block Duplication Block duplicate
Labels
Identifiers
- tid Sopen01g030240.1
Descriptions
- Description chromatin remodeling 31 (chr31) | FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding | INVOLVED IN: biological_process unknown | EXPRESSED IN: 13 plant structures | EXPRESSED DURING: 6 growth stages | CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal , DNA/RNA helicase, C-terminal , Helicase, superfamily 1/2, ATP-binding domain , SNF2-related | BEST Arabidopsis thaliana protein match is: chromatin remodeling 40
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0015074 | IEA | InterPro | DNA integration | |
| GO:0080188 | IEA | InterPro | gene silencing by RNA-directed DNA methylation |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0070615 | IEA | InterPro | nucleosome-dependent ATPase activity | |
| GO:0003676 | IEA | InterPro | nucleic acid binding |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR038718 | SNF2-like, N-terminal domain superfamily |
| IPR001584 | Integrase, catalytic core |
| IPR044567 | SNF2 domain-containing protein CLSY/DRD1 |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR029472 | Retrotransposon Copia-like, N-terminal |
| IPR014001 | Helicase superfamily 1/2, ATP-binding domain |
| IPR000330 | SNF2, N-terminal |
| IPR012337 | Ribonuclease H-like superfamily |
| IPR036397 | Ribonuclease H superfamily |
| IPR025724 | GAG-pre-integrase domain |
| Mapman id | Description |
|---|---|
| 16.9.1.2 | RNA processing.mRNA silencing.transacting siRNA pathway.regulatory protein (CLSY3/4) |