Gene: Sopen01g003560

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen01g003560
  • Transcript Identifier Sopen01g003560.1
  • Gene Type Coding gene
  • Location Spenn-ch01 : 2443598-2444176 : negative

Gene Family Information

  • ID HOM05D002140
  • #Genes/#Species 313/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen01g003560.1

Descriptions

  • Description TATA-box-binding protein (TATA-box factor) (TATA-binding factor) (TATA sequence-binding protein) (TBP) (Transcription initiation factor TFIID TBP subunit) - Solanum tuberosum (Potato), TBP (TATA binding protein) associates with TAF(II)s (TBP-associated factors) to form the TFIID general transcription factor complex | TATA binding protein 1 (TBP1) | FUNCTIONS IN: RNA polymerase II transcription factor activity, binding, DNA binding | INVOLVED IN: transcription initiation from RNA polymerase II promoter, regulation of transcription, DNA-dependent | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: TATA-box binding , Beta2-adaptin/TATA-box binding, C-terminal , Transcription factor TFIID, C-terminal/DNA glycosylase, N-terminal | BEST Arabidopsis thaliana protein match is: TATA binding protein 2
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006352
IEA
InterProDNA-templated transcription, initiation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
InterProDNA binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G55520

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT1G55520

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR012295 TBP domain superfamily
IPR000814 TATA-box binding protein
IPR033710 TATA-box binding protein, eukaryotic
Mapman id Description
15.3.4.2.1 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.TFIId complex.TATA-box-binding component
15.4.1 RNA biosynthesis.RNA polymerase III-dependent transcription.TATA-box-binding protein (TBP)