Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D002140', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '313', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p02790' => 'bna', 'A03p02810' => 'bna', 'A05p17440' => 'bna', 'A05p36090' => 'bna', 'A08p00600' => 'bna', 'A09p66520' => 'bna', 'Aa31LG10G730' => 'aar', 'Aa31LG8G660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2864' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4395' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3347' => 'aag', 'Actinidia00913' => 'ach', 'Actinidia16231' => 'ach', 'Actinidia22092' => 'ach', 'Actinidia37353' => 'ach', 'Actinidia38617' => 'ach', 'Ah.01g006490' => 'amhyb', 'Ah.08g222790' => 'amhyb', 'AL1G63540' => 'aly', 'Aqoxy5G04361' => 'aox', 'Aqoxy7G00924' => 'aox', 'arahy.Tifrunner.gnm1.ann1.286I7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5NK5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1DIDD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SM1QYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQ84UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5KUV8' => 'arhy', 'AT1G55520' => 'ath', 'AT3G13445' => 'ath', 'ATR0580G369' => 'atr', 'ATR0749G036' => 'atr', 'ATR0752G012' => 'atr', 'ATR0827G027' => 'atr', 'ATR0827G165' => 'atr', 'Atru.chr11.919' => 'acertr', 'Atru.chr2.1343' => 'acertr', 'AUR62001610' => 'cqu', 'AUR62011411' => 'cqu', 'AUR62016648' => 'cqu', 'AUR62020170' => 'cqu', 'AUR62027761' => 'cqu', 'BcaB01g05997' => 'bca', 'BcaB02g10818' => 'bca', 'BcaB04g16953' => 'bca', 'BcaB05g21658' => 'bca', 'BcaB05g21659' => 'bca', 'BcaB07g33210' => 'bca', 'BcaC01g01531' => 'bca', 'BcaC05g28734' => 'bca', 'BcaC05g29179' => 'bca', 'BcaC07g42013' => 'bca', 'BcaC08g43629' => 'bca', 'BcaC08g44201' => 'bca', 'BcaNung06580' => 'bca', 'BolC2t06243H' => 'bol', 'BolC3t12866H' => 'bol', 'BolC3t21589H' => 'bol', 'BolC5t33572H' => 'bol', 'BolC5t34114H' => 'bol', 'BolC6t36124H' => 'bol', 'BolC6t36808H' => 'bol', 'BolC8t52597H' => 'bol', 'BraA02t04886Z' => 'bra', 'BraA03t09642Z' => 'bra', 'BraA03t09644Z' => 'bra', 'BraA05t20639Z' => 'bra', 'BraA05t22416Z' => 'bra', 'BraA08t32117Z' => 'bra', 'C02p02780' => 'bna', 'C03p03210' => 'bna', 'C03p92830' => 'bna', 'C05p54470' => 'bna', 'C06p10460' => 'bna', 'C06p16090' => 'bna', 'C08p50690' => 'bna', 'CAN.G245.1' => 'can', 'CAN.G282.67' => 'can', 'CANSAT21G0818' => 'cansat', 'CANSAT25G2162' => 'cansat', 'CARHR045200' => 'chi', 'CARHR088100' => 'chi', 'Carub.0001s4401' => 'cru', 'Carub.0003s1289' => 'cru', 'Ca_19770_v3' => 'car', 'Cc00_g08900' => 'ccan', 'Cc01_g00250' => 'ccan', 'Cc02_g02090' => 'ccan', 'CDE02G2982' => 'cde', 'CDE04G0346' => 'cde', 'CDE05G0267' => 'cde', 'CDE05G3016' => 'cde', 'CDE07G0215' => 'cde', 'CDE10G0940' => 'cde', 'Cfa009536' => 'cfa', 'Cfa009539' => 'cfa', 'Cfa009542' => 'cfa', 'Ciclev10033950m.g' => 'ccl', 'CiPaw.02G041800' => 'cil', 'CiPaw.05G071700' => 'cil', 'CiPaw.13G178600' => 'cil', 'ClCG03G012090' => 'cla', 'ClCG03G012100' => 'cla', 'ClCG03G014640' => 'cla', 'ClCG03G014650' => 'cla', 'COL.COLO4_00049' => 'col', 'COL.COLO4_13616' => 'col', 'COL.COLO4_14003' => 'col', 'COL.COLO4_33701' => 'col', 'COL.COLO4_34140' => 'col', 'COL.COLO4_35337' => 'col', 'Cpa.g.sc51.95' => 'cpa', 'Cre12.g505700' => 'cre', 'CsaV3_1G041520' => 'csa', 'CSS0013302' => 'camsi', 'DCAR_009248' => 'dca', 'DCAR_016867' => 'dca', 'Dinv13486' => 'din', 'Dinv37008' => 'din', 'Duzib106G0023' => 'dzi', 'Duzib106G0138' => 'dzi', 'Duzib106G0576' => 'dzi', 'Duzib106G1867' => 'dzi', 'Duzib128G0762' => 'dzi', 'Duzib160G0419' => 'dzi', 'Duzib177G0320' => 'dzi', 'Duzib177G0568' => 'dzi', 'ECA233G0802' => 'eca', 'ECA233G1438' => 'eca', 'ECA236G4430' => 'eca', 'ECA240G1881' => 'eca', 'EL10Ac7g16222' => 'bvu', 'EL10Ac9g21802' => 'bvu', 'Eucgr.K01483' => 'egr', 'FAN02G2560' => 'fan', 'FAN05G1025' => 'fan', 'FAN07G1359' => 'fan', 'FAN09G1843' => 'fan', 'FAN11G0913' => 'fan', 'FAN11G2433' => 'fan', 'FAN11G3828' => 'fan', 'FAN14G2253' => 'fan', 'FAN14G2542' => 'fan', 'FAN16G1873' => 'fan', 'FAN19G0703' => 'fan', 'FAN21G1264' => 'fan', 'FAN21G1962' => 'fan', 'FAN23G1243' => 'fan', 'FAN25G0154' => 'fan', 'FAN25G3655' => 'fan', 'FAN26G1633' => 'fan', 'FAN28G1683' => 'fan', 'FAN28G2179' => 'fan', 'FvH4_1g28010' => 'fve', 'FvH4_3g32401' => 'fve', 'FvH4_3g32403' => 'fve', 'FvH4_3g32450' => 'fve', 'FvH4_3g45850' => 'fve', 'FvH4_4g21060' => 'fve', 'FvH4_6g12030' => 'fve', 'Glyma.02G057100' => 'gma', 'Glyma.03G036800' => 'gma', 'Glyma.09G276900' => 'gma', 'Glyma.16G140200' => 'gma', 'Glyma.18G212300' => 'gma', 'Glyma.19G111200' => 'gma', 'Gohir.A08G213400' => 'ghi', 'Gohir.A11G258300' => 'ghi', 'Gohir.A13G171800' => 'ghi', 'Gohir.D08G230500' => 'ghi', 'Gohir.D11G268300' => 'ghi', 'Gohir.D13G177600' => 'ghi', 'Gorai.013G202900' => 'gra', 'GSVIVG01025497001' => 'vvi', 'HanXRQChr03g0069271' => 'han', 'HanXRQChr10g0304991' => 'han', 'HanXRQChr16g0505421' => 'han', 'Haze_22927' => 'cav', 'Haze_26172' => 'cav', 'Hma1.2p1_0386F.1_g141790' => 'hma', 'HPP92_007933' => 'vpl', 'HPP92_007950' => 'vpl', 'HPP92_007951' => 'vpl', 'HPP92_019524' => 'vpl', 'Hund02026' => 'sun', 'Hund02027' => 'sun', 'Hund05839' => 'sun', 'Hund06196' => 'sun', 'Lalb_Chr07g0190661' => 'lal', 'Lalb_Chr07g0190671' => 'lal', 'Lalb_Chr12g0207601' => 'lal', 'Lj1A1137T82' => 'lonja', 'Lj1g0012267' => 'lja', 'Lj1g0021223' => 'lja', 'Lj2A357G78' => 'lonja', 'Lj3g0010186' => 'lja', 'Lsat_1_v5_gn_5_120581' => 'lsa', 'Lsat_1_v5_gn_6_55861' => 'lsa', 'Lsat_1_v5_gn_6_55920' => 'lsa', 'Lsat_1_v5_gn_7_91520' => 'lsa', 'Lsat_1_v5_gn_9_108101' => 'lsa', 'Manes.08G149100' => 'mes', 'Manes.09G142800' => 'mes', 'Mapoly0025s0099' => 'mpo', 'MBI11_g05457_MAGBIO' => 'mbi', 'MBI11_g05458_MAGBIO' => 'mbi', 'MCO16G423' => 'mco', 'MD03G1002100' => 'mdo', 'MD11G1002100' => 'mdo', 'MD12G1002700' => 'mdo', 'MD12G1176800' => 'mdo', 'MD14G1002000' => 'mdo', 'Medtr3g065900' => 'mtr', 'Medtr3g066070' => 'mtr', 'Medtr4g029010' => 'mtr', 'Medtr4g122610' => 'mtr', 'Medtr4g122635' => 'mtr', 'Medtr7g072580' => 'mtr', 'MELO3C015563.2' => 'cme', 'MSTRG.18035' => 'ama', 'MSTRG.20933' => 'ama', 'Nitab4.5_0000001g0040' => 'nta', 'Nitab4.5_0000911g0050' => 'nta', 'Nitab4.5_0002068g0060' => 'nta', 'Nn2g15884' => 'nnu', 'Nn7g35830' => 'nnu', 'Oeu022083.1' => 'oeu', 'Oeu023972.1' => 'oeu', 'Oeu060895.2' => 'oeu', 'Os03g0657000' => 'osa', 'Os12g0580300' => 'osa', 'Peaxi162Scf00076g01050' => 'pax', 'PGR119G0518' => 'pgr', 'PGR142G4380' => 'pgr', 'Phvul.001G076800' => 'pvu', 'Phvul.006G062900' => 'pvu', 'Phvul.010G081500' => 'pvu', 'Potri.013G059300' => 'ptr', 'Potri.019G033300' => 'ptr', 'Pp3c12_4720' => 'ppa', 'Pp3c4_16100' => 'ppa', 'PRCOL_00000348' => 'pco', 'Prupe.6G001900' => 'ppe', 'Prupe.7G002500' => 'ppe', 'Prupe.7G002800' => 'ppe', 'Psat0s1135g0040' => 'psa', 'Psat0s1135g0240' => 'psa', 'Psat2g055000' => 'psa', 'Psat3g121040' => 'psa', 'Psat5g121280' => 'psa', 'Psat7g230160' => 'psa', 'PSO170G4543' => 'pso', 'PSO339G0900' => 'pso', 'PSO339G4383' => 'pso', 'PSO339G5032' => 'pso', 'PSO384G4207' => 'pso', 'PSO478G4144' => 'pso', 'QL01p010469' => 'qlo', 'QL01p010488' => 'qlo', 'RcHm_v2.0_Chr3g0463861' => 'rch', 'RcHm_v2.0_Chr3g0497421' => 'rch', 'RcHm_v2.0_Chr5g0059361' => 'rch', 'RcHm_v2.0_Chr5g0083961' => 'rch', 'Rhsim04G0087100' => 'rsi', 'Rhsim13G0234100' => 'rsi', 'Sabra13G0052700' => 'sbr', 'SalBow2G3503' => 'sbo', 'SalBow6G3197' => 'sbo', 'SalBow6G5773' => 'sbo', 'Sc14g0001670' => 'sci', 'Sed0009576' => 'sed', 'Sed0023057' => 'sed', 'SEGI_36240' => 'sgi', 'SGA_v2.0_scaffold3G01690' => 'sas', 'SGA_v2.0_scaffold3G01709' => 'sas', 'SGA_v2.0_scaffold6G03327' => 'sas', 'SHI25601' => 'shi', 'SMO116G0412' => 'smo', 'SMO361G0654' => 'smo', 'Solyc01g028930.4' => 'sly', 'Solyc01g150102.1' => 'sly', 'Sopen01g003560' => 'spe', 'Sopen01g017150' => 'spe', 'Sp1g41130' => 'spa', 'Sp3g11650' => 'spa', 'Sp6g36230' => 'spa', 'TAR623G0107' => 'tar', 'TAR633G2813' => 'tar', 'THA.LOC104805745' => 'tha', 'THA.LOC104805757' => 'tha', 'THA.LOC104805761' => 'tha', 'THA.LOC104822696' => 'tha', 'Thecc.01G125100' => 'tca', 'Thecc.01G125200' => 'tca', 'Thecc.01G125400' => 'tca', 'Thecc.05G236100' => 'tca', 'Thecc.05G293200' => 'tca', 'Thhalv10011790m.g' => 'esa', 'Thhalv10021552m.g' => 'esa', 'Thhalv10022351m.g' => 'esa', 'TPR.G19738' => 'tpr', 'TWI09G0349' => 'twi', 'TWI09G1209' => 'twi', 'TWI34G0344' => 'twi', 'TWI53G0967' => 'twi', 'unitig_37.g13064' => 'ugi', 'vmacro04260' => 'vma', 'vmacro04269' => 'vma', 'vmacro09145' => 'vma', 'Zm00001eb002410' => 'zma', 'Zm00001eb052680' => 'zma', 'Zm00001eb218190' => 'zma', 'Zm00001eb220320' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D002140', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D002140' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D002140', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '313', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002140' ) ), 'genes' => array( 'A03p02790' => 'bna', 'A03p02810' => 'bna', 'A05p17440' => 'bna', 'A05p36090' => 'bna', 'A08p00600' => 'bna', 'A09p66520' => 'bna', 'Aa31LG10G730' => 'aar', 'Aa31LG8G660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2864' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4395' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3347' => 'aag', 'Actinidia00913' => 'ach', 'Actinidia16231' => 'ach', 'Actinidia22092' => 'ach', 'Actinidia37353' => 'ach', 'Actinidia38617' => 'ach', 'Ah.01g006490' => 'amhyb', 'Ah.08g222790' => 'amhyb', 'AL1G63540' => 'aly', 'Aqoxy5G04361' => 'aox', 'Aqoxy7G00924' => 'aox', 'arahy.Tifrunner.gnm1.ann1.286I7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5NK5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1DIDD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SM1QYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQ84UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5KUV8' => 'arhy', 'AT1G55520' => 'ath', 'AT3G13445' => 'ath', 'ATR0580G369' => 'atr', 'ATR0749G036' => 'atr', 'ATR0752G012' => 'atr', 'ATR0827G027' => 'atr', 'ATR0827G165' => 'atr', 'Atru.chr11.919' => 'acertr', 'Atru.chr2.1343' => 'acertr', 'AUR62001610' => 'cqu', 'AUR62011411' => 'cqu', 'AUR62016648' => 'cqu', 'AUR62020170' => 'cqu', 'AUR62027761' => 'cqu', 'BcaB01g05997' => 'bca', 'BcaB02g10818' => 'bca', 'BcaB04g16953' => 'bca', 'BcaB05g21658' => 'bca', 'BcaB05g21659' => 'bca', 'BcaB07g33210' => 'bca', 'BcaC01g01531' => 'bca', 'BcaC05g28734' => 'bca', 'BcaC05g29179' => 'bca', 'BcaC07g42013' => 'bca', 'BcaC08g43629' => 'bca', 'BcaC08g44201' => 'bca', 'BcaNung06580' => 'bca', 'BolC2t06243H' => 'bol', 'BolC3t12866H' => 'bol', 'BolC3t21589H' => 'bol', 'BolC5t33572H' => 'bol', 'BolC5t34114H' => 'bol', 'BolC6t36124H' => 'bol', 'BolC6t36808H' => 'bol', 'BolC8t52597H' => 'bol', 'BraA02t04886Z' => 'bra', 'BraA03t09642Z' => 'bra', 'BraA03t09644Z' => 'bra', 'BraA05t20639Z' => 'bra', 'BraA05t22416Z' => 'bra', 'BraA08t32117Z' => 'bra', 'C02p02780' => 'bna', 'C03p03210' => 'bna', 'C03p92830' => 'bna', 'C05p54470' => 'bna', 'C06p10460' => 'bna', 'C06p16090' => 'bna', 'C08p50690' => 'bna', 'CAN.G245.1' => 'can', 'CAN.G282.67' => 'can', 'CANSAT21G0818' => 'cansat', 'CANSAT25G2162' => 'cansat', 'CARHR045200' => 'chi', 'CARHR088100' => 'chi', 'Carub.0001s4401' => 'cru', 'Carub.0003s1289' => 'cru', 'Ca_19770_v3' => 'car', 'Cc00_g08900' => 'ccan', 'Cc01_g00250' => 'ccan', 'Cc02_g02090' => 'ccan', 'CDE02G2982' => 'cde', 'CDE04G0346' => 'cde', 'CDE05G0267' => 'cde', 'CDE05G3016' => 'cde', 'CDE07G0215' => 'cde', 'CDE10G0940' => 'cde', 'Cfa009536' => 'cfa', 'Cfa009539' => 'cfa', 'Cfa009542' => 'cfa', 'Ciclev10033950m.g' => 'ccl', 'CiPaw.02G041800' => 'cil', 'CiPaw.05G071700' => 'cil', 'CiPaw.13G178600' => 'cil', 'ClCG03G012090' => 'cla', 'ClCG03G012100' => 'cla', 'ClCG03G014640' => 'cla', 'ClCG03G014650' => 'cla', 'COL.COLO4_00049' => 'col', 'COL.COLO4_13616' => 'col', 'COL.COLO4_14003' => 'col', 'COL.COLO4_33701' => 'col', 'COL.COLO4_34140' => 'col', 'COL.COLO4_35337' => 'col', 'Cpa.g.sc51.95' => 'cpa', 'Cre12.g505700' => 'cre', 'CsaV3_1G041520' => 'csa', 'CSS0013302' => 'camsi', 'DCAR_009248' => 'dca', 'DCAR_016867' => 'dca', 'Dinv13486' => 'din', 'Dinv37008' => 'din', 'Duzib106G0023' => 'dzi', 'Duzib106G0138' => 'dzi', 'Duzib106G0576' => 'dzi', 'Duzib106G1867' => 'dzi', 'Duzib128G0762' => 'dzi', 'Duzib160G0419' => 'dzi', 'Duzib177G0320' => 'dzi', 'Duzib177G0568' => 'dzi', 'ECA233G0802' => 'eca', 'ECA233G1438' => 'eca', 'ECA236G4430' => 'eca', 'ECA240G1881' => 'eca', 'EL10Ac7g16222' => 'bvu', 'EL10Ac9g21802' => 'bvu', 'Eucgr.K01483' => 'egr', 'FAN02G2560' => 'fan', 'FAN05G1025' => 'fan', 'FAN07G1359' => 'fan', 'FAN09G1843' => 'fan', 'FAN11G0913' => 'fan', 'FAN11G2433' => 'fan', 'FAN11G3828' => 'fan', 'FAN14G2253' => 'fan', 'FAN14G2542' => 'fan', 'FAN16G1873' => 'fan', 'FAN19G0703' => 'fan', 'FAN21G1264' => 'fan', 'FAN21G1962' => 'fan', 'FAN23G1243' => 'fan', 'FAN25G0154' => 'fan', 'FAN25G3655' => 'fan', 'FAN26G1633' => 'fan', 'FAN28G1683' => 'fan', 'FAN28G2179' => 'fan', 'FvH4_1g28010' => 'fve', 'FvH4_3g32401' => 'fve', 'FvH4_3g32403' => 'fve', 'FvH4_3g32450' => 'fve', 'FvH4_3g45850' => 'fve', 'FvH4_4g21060' => 'fve', 'FvH4_6g12030' => 'fve', 'Glyma.02G057100' => 'gma', 'Glyma.03G036800' => 'gma', 'Glyma.09G276900' => 'gma', 'Glyma.16G140200' => 'gma', 'Glyma.18G212300' => 'gma', 'Glyma.19G111200' => 'gma', 'Gohir.A08G213400' => 'ghi', 'Gohir.A11G258300' => 'ghi', 'Gohir.A13G171800' => 'ghi', 'Gohir.D08G230500' => 'ghi', 'Gohir.D11G268300' => 'ghi', 'Gohir.D13G177600' => 'ghi', 'Gorai.013G202900' => 'gra', 'GSVIVG01025497001' => 'vvi', 'HanXRQChr03g0069271' => 'han', 'HanXRQChr10g0304991' => 'han', 'HanXRQChr16g0505421' => 'han', 'Haze_22927' => 'cav', 'Haze_26172' => 'cav', 'Hma1.2p1_0386F.1_g141790' => 'hma', 'HPP92_007933' => 'vpl', 'HPP92_007950' => 'vpl', 'HPP92_007951' => 'vpl', 'HPP92_019524' => 'vpl', 'Hund02026' => 'sun', 'Hund02027' => 'sun', 'Hund05839' => 'sun', 'Hund06196' => 'sun', 'Lalb_Chr07g0190661' => 'lal', 'Lalb_Chr07g0190671' => 'lal', 'Lalb_Chr12g0207601' => 'lal', 'Lj1A1137T82' => 'lonja', 'Lj1g0012267' => 'lja', 'Lj1g0021223' => 'lja', 'Lj2A357G78' => 'lonja', 'Lj3g0010186' => 'lja', 'Lsat_1_v5_gn_5_120581' => 'lsa', 'Lsat_1_v5_gn_6_55861' => 'lsa', 'Lsat_1_v5_gn_6_55920' => 'lsa', 'Lsat_1_v5_gn_7_91520' => 'lsa', 'Lsat_1_v5_gn_9_108101' => 'lsa', 'Manes.08G149100' => 'mes', 'Manes.09G142800' => 'mes', 'Mapoly0025s0099' => 'mpo', 'MBI11_g05457_MAGBIO' => 'mbi', 'MBI11_g05458_MAGBIO' => 'mbi', 'MCO16G423' => 'mco', 'MD03G1002100' => 'mdo', 'MD11G1002100' => 'mdo', 'MD12G1002700' => 'mdo', 'MD12G1176800' => 'mdo', 'MD14G1002000' => 'mdo', 'Medtr3g065900' => 'mtr', 'Medtr3g066070' => 'mtr', 'Medtr4g029010' => 'mtr', 'Medtr4g122610' => 'mtr', 'Medtr4g122635' => 'mtr', 'Medtr7g072580' => 'mtr', 'MELO3C015563.2' => 'cme', 'MSTRG.18035' => 'ama', 'MSTRG.20933' => 'ama', 'Nitab4.5_0000001g0040' => 'nta', 'Nitab4.5_0000911g0050' => 'nta', 'Nitab4.5_0002068g0060' => 'nta', 'Nn2g15884' => 'nnu', 'Nn7g35830' => 'nnu', 'Oeu022083.1' => 'oeu', 'Oeu023972.1' => 'oeu', 'Oeu060895.2' => 'oeu', 'Os03g0657000' => 'osa', 'Os12g0580300' => 'osa', 'Peaxi162Scf00076g01050' => 'pax', 'PGR119G0518' => 'pgr', 'PGR142G4380' => 'pgr', 'Phvul.001G076800' => 'pvu', 'Phvul.006G062900' => 'pvu', 'Phvul.010G081500' => 'pvu', 'Potri.013G059300' => 'ptr', 'Potri.019G033300' => 'ptr', 'Pp3c12_4720' => 'ppa', 'Pp3c4_16100' => 'ppa', 'PRCOL_00000348' => 'pco', 'Prupe.6G001900' => 'ppe', 'Prupe.7G002500' => 'ppe', 'Prupe.7G002800' => 'ppe', 'Psat0s1135g0040' => 'psa', 'Psat0s1135g0240' => 'psa', 'Psat2g055000' => 'psa', 'Psat3g121040' => 'psa', 'Psat5g121280' => 'psa', 'Psat7g230160' => 'psa', 'PSO170G4543' => 'pso', 'PSO339G0900' => 'pso', 'PSO339G4383' => 'pso', 'PSO339G5032' => 'pso', 'PSO384G4207' => 'pso', 'PSO478G4144' => 'pso', 'QL01p010469' => 'qlo', 'QL01p010488' => 'qlo', 'RcHm_v2.0_Chr3g0463861' => 'rch', 'RcHm_v2.0_Chr3g0497421' => 'rch', 'RcHm_v2.0_Chr5g0059361' => 'rch', 'RcHm_v2.0_Chr5g0083961' => 'rch', 'Rhsim04G0087100' => 'rsi', 'Rhsim13G0234100' => 'rsi', 'Sabra13G0052700' => 'sbr', 'SalBow2G3503' => 'sbo', 'SalBow6G3197' => 'sbo', 'SalBow6G5773' => 'sbo', 'Sc14g0001670' => 'sci', 'Sed0009576' => 'sed', 'Sed0023057' => 'sed', 'SEGI_36240' => 'sgi', 'SGA_v2.0_scaffold3G01690' => 'sas', 'SGA_v2.0_scaffold3G01709' => 'sas', 'SGA_v2.0_scaffold6G03327' => 'sas', 'SHI25601' => 'shi', 'SMO116G0412' => 'smo', 'SMO361G0654' => 'smo', 'Solyc01g028930.4' => 'sly', 'Solyc01g150102.1' => 'sly', 'Sopen01g003560' => 'spe', 'Sopen01g017150' => 'spe', 'Sp1g41130' => 'spa', 'Sp3g11650' => 'spa', 'Sp6g36230' => 'spa', 'TAR623G0107' => 'tar', 'TAR633G2813' => 'tar', 'THA.LOC104805745' => 'tha', 'THA.LOC104805757' => 'tha', 'THA.LOC104805761' => 'tha', 'THA.LOC104822696' => 'tha', 'Thecc.01G125100' => 'tca', 'Thecc.01G125200' => 'tca', 'Thecc.01G125400' => 'tca', 'Thecc.05G236100' => 'tca', 'Thecc.05G293200' => 'tca', 'Thhalv10011790m.g' => 'esa', 'Thhalv10021552m.g' => 'esa', 'Thhalv10022351m.g' => 'esa', 'TPR.G19738' => 'tpr', 'TWI09G0349' => 'twi', 'TWI09G1209' => 'twi', 'TWI34G0344' => 'twi', 'TWI53G0967' => 'twi', 'unitig_37.g13064' => 'ugi', 'vmacro04260' => 'vma', 'vmacro04269' => 'vma', 'vmacro09145' => 'vma', 'Zm00001eb002410' => 'zma', 'Zm00001eb052680' => 'zma', 'Zm00001eb218190' => 'zma', 'Zm00001eb220320' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D002140' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D002140' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D002140' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002140' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D002140', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '313', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p02790' => 'bna', 'A03p02810' => 'bna', 'A05p17440' => 'bna', 'A05p36090' => 'bna', 'A08p00600' => 'bna', 'A09p66520' => 'bna', 'Aa31LG10G730' => 'aar', 'Aa31LG8G660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2864' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4395' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3347' => 'aag', 'Actinidia00913' => 'ach', 'Actinidia16231' => 'ach', 'Actinidia22092' => 'ach', 'Actinidia37353' => 'ach', 'Actinidia38617' => 'ach', 'Ah.01g006490' => 'amhyb', 'Ah.08g222790' => 'amhyb', 'AL1G63540' => 'aly', 'Aqoxy5G04361' => 'aox', 'Aqoxy7G00924' => 'aox', 'arahy.Tifrunner.gnm1.ann1.286I7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5NK5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1DIDD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SM1QYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQ84UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5KUV8' => 'arhy', 'AT1G55520' => 'ath', 'AT3G13445' => 'ath', 'ATR0580G369' => 'atr', 'ATR0749G036' => 'atr', 'ATR0752G012' => 'atr', 'ATR0827G027' => 'atr', 'ATR0827G165' => 'atr', 'Atru.chr11.919' => 'acertr', 'Atru.chr2.1343' => 'acertr', 'AUR62001610' => 'cqu', 'AUR62011411' => 'cqu', 'AUR62016648' => 'cqu', 'AUR62020170' => 'cqu', 'AUR62027761' => 'cqu', 'BcaB01g05997' => 'bca', 'BcaB02g10818' => 'bca', 'BcaB04g16953' => 'bca', 'BcaB05g21658' => 'bca', 'BcaB05g21659' => 'bca', 'BcaB07g33210' => 'bca', 'BcaC01g01531' => 'bca', 'BcaC05g28734' => 'bca', 'BcaC05g29179' => 'bca', 'BcaC07g42013' => 'bca', 'BcaC08g43629' => 'bca', 'BcaC08g44201' => 'bca', 'BcaNung06580' => 'bca', 'BolC2t06243H' => 'bol', 'BolC3t12866H' => 'bol', 'BolC3t21589H' => 'bol', 'BolC5t33572H' => 'bol', 'BolC5t34114H' => 'bol', 'BolC6t36124H' => 'bol', 'BolC6t36808H' => 'bol', 'BolC8t52597H' => 'bol', 'BraA02t04886Z' => 'bra', 'BraA03t09642Z' => 'bra', 'BraA03t09644Z' => 'bra', 'BraA05t20639Z' => 'bra', 'BraA05t22416Z' => 'bra', 'BraA08t32117Z' => 'bra', 'C02p02780' => 'bna', 'C03p03210' => 'bna', 'C03p92830' => 'bna', 'C05p54470' => 'bna', 'C06p10460' => 'bna', 'C06p16090' => 'bna', 'C08p50690' => 'bna', 'CAN.G245.1' => 'can', 'CAN.G282.67' => 'can', 'CANSAT21G0818' => 'cansat', 'CANSAT25G2162' => 'cansat', 'CARHR045200' => 'chi', 'CARHR088100' => 'chi', 'Carub.0001s4401' => 'cru', 'Carub.0003s1289' => 'cru', 'Ca_19770_v3' => 'car', 'Cc00_g08900' => 'ccan', 'Cc01_g00250' => 'ccan', 'Cc02_g02090' => 'ccan', 'CDE02G2982' => 'cde', 'CDE04G0346' => 'cde', 'CDE05G0267' => 'cde', 'CDE05G3016' => 'cde', 'CDE07G0215' => 'cde', 'CDE10G0940' => 'cde', 'Cfa009536' => 'cfa', 'Cfa009539' => 'cfa', 'Cfa009542' => 'cfa', 'Ciclev10033950m.g' => 'ccl', 'CiPaw.02G041800' => 'cil', 'CiPaw.05G071700' => 'cil', 'CiPaw.13G178600' => 'cil', 'ClCG03G012090' => 'cla', 'ClCG03G012100' => 'cla', 'ClCG03G014640' => 'cla', 'ClCG03G014650' => 'cla', 'COL.COLO4_00049' => 'col', 'COL.COLO4_13616' => 'col', 'COL.COLO4_14003' => 'col', 'COL.COLO4_33701' => 'col', 'COL.COLO4_34140' => 'col', 'COL.COLO4_35337' => 'col', 'Cpa.g.sc51.95' => 'cpa', 'Cre12.g505700' => 'cre', 'CsaV3_1G041520' => 'csa', 'CSS0013302' => 'camsi', 'DCAR_009248' => 'dca', 'DCAR_016867' => 'dca', 'Dinv13486' => 'din', 'Dinv37008' => 'din', 'Duzib106G0023' => 'dzi', 'Duzib106G0138' => 'dzi', 'Duzib106G0576' => 'dzi', 'Duzib106G1867' => 'dzi', 'Duzib128G0762' => 'dzi', 'Duzib160G0419' => 'dzi', 'Duzib177G0320' => 'dzi', 'Duzib177G0568' => 'dzi', 'ECA233G0802' => 'eca', 'ECA233G1438' => 'eca', 'ECA236G4430' => 'eca', 'ECA240G1881' => 'eca', 'EL10Ac7g16222' => 'bvu', 'EL10Ac9g21802' => 'bvu', 'Eucgr.K01483' => 'egr', 'FAN02G2560' => 'fan', 'FAN05G1025' => 'fan', 'FAN07G1359' => 'fan', 'FAN09G1843' => 'fan', 'FAN11G0913' => 'fan', 'FAN11G2433' => 'fan', 'FAN11G3828' => 'fan', 'FAN14G2253' => 'fan', 'FAN14G2542' => 'fan', 'FAN16G1873' => 'fan', 'FAN19G0703' => 'fan', 'FAN21G1264' => 'fan', 'FAN21G1962' => 'fan', 'FAN23G1243' => 'fan', 'FAN25G0154' => 'fan', 'FAN25G3655' => 'fan', 'FAN26G1633' => 'fan', 'FAN28G1683' => 'fan', 'FAN28G2179' => 'fan', 'FvH4_1g28010' => 'fve', 'FvH4_3g32401' => 'fve', 'FvH4_3g32403' => 'fve', 'FvH4_3g32450' => 'fve', 'FvH4_3g45850' => 'fve', 'FvH4_4g21060' => 'fve', 'FvH4_6g12030' => 'fve', 'Glyma.02G057100' => 'gma', 'Glyma.03G036800' => 'gma', 'Glyma.09G276900' => 'gma', 'Glyma.16G140200' => 'gma', 'Glyma.18G212300' => 'gma', 'Glyma.19G111200' => 'gma', 'Gohir.A08G213400' => 'ghi', 'Gohir.A11G258300' => 'ghi', 'Gohir.A13G171800' => 'ghi', 'Gohir.D08G230500' => 'ghi', 'Gohir.D11G268300' => 'ghi', 'Gohir.D13G177600' => 'ghi', 'Gorai.013G202900' => 'gra', 'GSVIVG01025497001' => 'vvi', 'HanXRQChr03g0069271' => 'han', 'HanXRQChr10g0304991' => 'han', 'HanXRQChr16g0505421' => 'han', 'Haze_22927' => 'cav', 'Haze_26172' => 'cav', 'Hma1.2p1_0386F.1_g141790' => 'hma', 'HPP92_007933' => 'vpl', 'HPP92_007950' => 'vpl', 'HPP92_007951' => 'vpl', 'HPP92_019524' => 'vpl', 'Hund02026' => 'sun', 'Hund02027' => 'sun', 'Hund05839' => 'sun', 'Hund06196' => 'sun', 'Lalb_Chr07g0190661' => 'lal', 'Lalb_Chr07g0190671' => 'lal', 'Lalb_Chr12g0207601' => 'lal', 'Lj1A1137T82' => 'lonja', 'Lj1g0012267' => 'lja', 'Lj1g0021223' => 'lja', 'Lj2A357G78' => 'lonja', 'Lj3g0010186' => 'lja', 'Lsat_1_v5_gn_5_120581' => 'lsa', 'Lsat_1_v5_gn_6_55861' => 'lsa', 'Lsat_1_v5_gn_6_55920' => 'lsa', 'Lsat_1_v5_gn_7_91520' => 'lsa', 'Lsat_1_v5_gn_9_108101' => 'lsa', 'Manes.08G149100' => 'mes', 'Manes.09G142800' => 'mes', 'Mapoly0025s0099' => 'mpo', 'MBI11_g05457_MAGBIO' => 'mbi', 'MBI11_g05458_MAGBIO' => 'mbi', 'MCO16G423' => 'mco', 'MD03G1002100' => 'mdo', 'MD11G1002100' => 'mdo', 'MD12G1002700' => 'mdo', 'MD12G1176800' => 'mdo', 'MD14G1002000' => 'mdo', 'Medtr3g065900' => 'mtr', 'Medtr3g066070' => 'mtr', 'Medtr4g029010' => 'mtr', 'Medtr4g122610' => 'mtr', 'Medtr4g122635' => 'mtr', 'Medtr7g072580' => 'mtr', 'MELO3C015563.2' => 'cme', 'MSTRG.18035' => 'ama', 'MSTRG.20933' => 'ama', 'Nitab4.5_0000001g0040' => 'nta', 'Nitab4.5_0000911g0050' => 'nta', 'Nitab4.5_0002068g0060' => 'nta', 'Nn2g15884' => 'nnu', 'Nn7g35830' => 'nnu', 'Oeu022083.1' => 'oeu', 'Oeu023972.1' => 'oeu', 'Oeu060895.2' => 'oeu', 'Os03g0657000' => 'osa', 'Os12g0580300' => 'osa', 'Peaxi162Scf00076g01050' => 'pax', 'PGR119G0518' => 'pgr', 'PGR142G4380' => 'pgr', 'Phvul.001G076800' => 'pvu', 'Phvul.006G062900' => 'pvu', 'Phvul.010G081500' => 'pvu', 'Potri.013G059300' => 'ptr', 'Potri.019G033300' => 'ptr', 'Pp3c12_4720' => 'ppa', 'Pp3c4_16100' => 'ppa', 'PRCOL_00000348' => 'pco', 'Prupe.6G001900' => 'ppe', 'Prupe.7G002500' => 'ppe', 'Prupe.7G002800' => 'ppe', 'Psat0s1135g0040' => 'psa', 'Psat0s1135g0240' => 'psa', 'Psat2g055000' => 'psa', 'Psat3g121040' => 'psa', 'Psat5g121280' => 'psa', 'Psat7g230160' => 'psa', 'PSO170G4543' => 'pso', 'PSO339G0900' => 'pso', 'PSO339G4383' => 'pso', 'PSO339G5032' => 'pso', 'PSO384G4207' => 'pso', 'PSO478G4144' => 'pso', 'QL01p010469' => 'qlo', 'QL01p010488' => 'qlo', 'RcHm_v2.0_Chr3g0463861' => 'rch', 'RcHm_v2.0_Chr3g0497421' => 'rch', 'RcHm_v2.0_Chr5g0059361' => 'rch', 'RcHm_v2.0_Chr5g0083961' => 'rch', 'Rhsim04G0087100' => 'rsi', 'Rhsim13G0234100' => 'rsi', 'Sabra13G0052700' => 'sbr', 'SalBow2G3503' => 'sbo', 'SalBow6G3197' => 'sbo', 'SalBow6G5773' => 'sbo', 'Sc14g0001670' => 'sci', 'Sed0009576' => 'sed', 'Sed0023057' => 'sed', 'SEGI_36240' => 'sgi', 'SGA_v2.0_scaffold3G01690' => 'sas', 'SGA_v2.0_scaffold3G01709' => 'sas', 'SGA_v2.0_scaffold6G03327' => 'sas', 'SHI25601' => 'shi', 'SMO116G0412' => 'smo', 'SMO361G0654' => 'smo', 'Solyc01g028930.4' => 'sly', 'Solyc01g150102.1' => 'sly', 'Sopen01g003560' => 'spe', 'Sopen01g017150' => 'spe', 'Sp1g41130' => 'spa', 'Sp3g11650' => 'spa', 'Sp6g36230' => 'spa', 'TAR623G0107' => 'tar', 'TAR633G2813' => 'tar', 'THA.LOC104805745' => 'tha', 'THA.LOC104805757' => 'tha', 'THA.LOC104805761' => 'tha', 'THA.LOC104822696' => 'tha', 'Thecc.01G125100' => 'tca', 'Thecc.01G125200' => 'tca', 'Thecc.01G125400' => 'tca', 'Thecc.05G236100' => 'tca', 'Thecc.05G293200' => 'tca', 'Thhalv10011790m.g' => 'esa', 'Thhalv10021552m.g' => 'esa', 'Thhalv10022351m.g' => 'esa', 'TPR.G19738' => 'tpr', 'TWI09G0349' => 'twi', 'TWI09G1209' => 'twi', 'TWI34G0344' => 'twi', 'TWI53G0967' => 'twi', 'unitig_37.g13064' => 'ugi', 'vmacro04260' => 'vma', 'vmacro04269' => 'vma', 'vmacro09145' => 'vma', 'Zm00001eb002410' => 'zma', 'Zm00001eb052680' => 'zma', 'Zm00001eb218190' => 'zma', 'Zm00001eb220320' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D002140', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D002140' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D002140', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '313', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002140' ) ), 'genes' => array( 'A03p02790' => 'bna', 'A03p02810' => 'bna', 'A05p17440' => 'bna', 'A05p36090' => 'bna', 'A08p00600' => 'bna', 'A09p66520' => 'bna', 'Aa31LG10G730' => 'aar', 'Aa31LG8G660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2864' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4395' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3347' => 'aag', 'Actinidia00913' => 'ach', 'Actinidia16231' => 'ach', 'Actinidia22092' => 'ach', 'Actinidia37353' => 'ach', 'Actinidia38617' => 'ach', 'Ah.01g006490' => 'amhyb', 'Ah.08g222790' => 'amhyb', 'AL1G63540' => 'aly', 'Aqoxy5G04361' => 'aox', 'Aqoxy7G00924' => 'aox', 'arahy.Tifrunner.gnm1.ann1.286I7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5NK5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1DIDD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SM1QYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQ84UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5KUV8' => 'arhy', 'AT1G55520' => 'ath', 'AT3G13445' => 'ath', 'ATR0580G369' => 'atr', 'ATR0749G036' => 'atr', 'ATR0752G012' => 'atr', 'ATR0827G027' => 'atr', 'ATR0827G165' => 'atr', 'Atru.chr11.919' => 'acertr', 'Atru.chr2.1343' => 'acertr', 'AUR62001610' => 'cqu', 'AUR62011411' => 'cqu', 'AUR62016648' => 'cqu', 'AUR62020170' => 'cqu', 'AUR62027761' => 'cqu', 'BcaB01g05997' => 'bca', 'BcaB02g10818' => 'bca', 'BcaB04g16953' => 'bca', 'BcaB05g21658' => 'bca', 'BcaB05g21659' => 'bca', 'BcaB07g33210' => 'bca', 'BcaC01g01531' => 'bca', 'BcaC05g28734' => 'bca', 'BcaC05g29179' => 'bca', 'BcaC07g42013' => 'bca', 'BcaC08g43629' => 'bca', 'BcaC08g44201' => 'bca', 'BcaNung06580' => 'bca', 'BolC2t06243H' => 'bol', 'BolC3t12866H' => 'bol', 'BolC3t21589H' => 'bol', 'BolC5t33572H' => 'bol', 'BolC5t34114H' => 'bol', 'BolC6t36124H' => 'bol', 'BolC6t36808H' => 'bol', 'BolC8t52597H' => 'bol', 'BraA02t04886Z' => 'bra', 'BraA03t09642Z' => 'bra', 'BraA03t09644Z' => 'bra', 'BraA05t20639Z' => 'bra', 'BraA05t22416Z' => 'bra', 'BraA08t32117Z' => 'bra', 'C02p02780' => 'bna', 'C03p03210' => 'bna', 'C03p92830' => 'bna', 'C05p54470' => 'bna', 'C06p10460' => 'bna', 'C06p16090' => 'bna', 'C08p50690' => 'bna', 'CAN.G245.1' => 'can', 'CAN.G282.67' => 'can', 'CANSAT21G0818' => 'cansat', 'CANSAT25G2162' => 'cansat', 'CARHR045200' => 'chi', 'CARHR088100' => 'chi', 'Carub.0001s4401' => 'cru', 'Carub.0003s1289' => 'cru', 'Ca_19770_v3' => 'car', 'Cc00_g08900' => 'ccan', 'Cc01_g00250' => 'ccan', 'Cc02_g02090' => 'ccan', 'CDE02G2982' => 'cde', 'CDE04G0346' => 'cde', 'CDE05G0267' => 'cde', 'CDE05G3016' => 'cde', 'CDE07G0215' => 'cde', 'CDE10G0940' => 'cde', 'Cfa009536' => 'cfa', 'Cfa009539' => 'cfa', 'Cfa009542' => 'cfa', 'Ciclev10033950m.g' => 'ccl', 'CiPaw.02G041800' => 'cil', 'CiPaw.05G071700' => 'cil', 'CiPaw.13G178600' => 'cil', 'ClCG03G012090' => 'cla', 'ClCG03G012100' => 'cla', 'ClCG03G014640' => 'cla', 'ClCG03G014650' => 'cla', 'COL.COLO4_00049' => 'col', 'COL.COLO4_13616' => 'col', 'COL.COLO4_14003' => 'col', 'COL.COLO4_33701' => 'col', 'COL.COLO4_34140' => 'col', 'COL.COLO4_35337' => 'col', 'Cpa.g.sc51.95' => 'cpa', 'Cre12.g505700' => 'cre', 'CsaV3_1G041520' => 'csa', 'CSS0013302' => 'camsi', 'DCAR_009248' => 'dca', 'DCAR_016867' => 'dca', 'Dinv13486' => 'din', 'Dinv37008' => 'din', 'Duzib106G0023' => 'dzi', 'Duzib106G0138' => 'dzi', 'Duzib106G0576' => 'dzi', 'Duzib106G1867' => 'dzi', 'Duzib128G0762' => 'dzi', 'Duzib160G0419' => 'dzi', 'Duzib177G0320' => 'dzi', 'Duzib177G0568' => 'dzi', 'ECA233G0802' => 'eca', 'ECA233G1438' => 'eca', 'ECA236G4430' => 'eca', 'ECA240G1881' => 'eca', 'EL10Ac7g16222' => 'bvu', 'EL10Ac9g21802' => 'bvu', 'Eucgr.K01483' => 'egr', 'FAN02G2560' => 'fan', 'FAN05G1025' => 'fan', 'FAN07G1359' => 'fan', 'FAN09G1843' => 'fan', 'FAN11G0913' => 'fan', 'FAN11G2433' => 'fan', 'FAN11G3828' => 'fan', 'FAN14G2253' => 'fan', 'FAN14G2542' => 'fan', 'FAN16G1873' => 'fan', 'FAN19G0703' => 'fan', 'FAN21G1264' => 'fan', 'FAN21G1962' => 'fan', 'FAN23G1243' => 'fan', 'FAN25G0154' => 'fan', 'FAN25G3655' => 'fan', 'FAN26G1633' => 'fan', 'FAN28G1683' => 'fan', 'FAN28G2179' => 'fan', 'FvH4_1g28010' => 'fve', 'FvH4_3g32401' => 'fve', 'FvH4_3g32403' => 'fve', 'FvH4_3g32450' => 'fve', 'FvH4_3g45850' => 'fve', 'FvH4_4g21060' => 'fve', 'FvH4_6g12030' => 'fve', 'Glyma.02G057100' => 'gma', 'Glyma.03G036800' => 'gma', 'Glyma.09G276900' => 'gma', 'Glyma.16G140200' => 'gma', 'Glyma.18G212300' => 'gma', 'Glyma.19G111200' => 'gma', 'Gohir.A08G213400' => 'ghi', 'Gohir.A11G258300' => 'ghi', 'Gohir.A13G171800' => 'ghi', 'Gohir.D08G230500' => 'ghi', 'Gohir.D11G268300' => 'ghi', 'Gohir.D13G177600' => 'ghi', 'Gorai.013G202900' => 'gra', 'GSVIVG01025497001' => 'vvi', 'HanXRQChr03g0069271' => 'han', 'HanXRQChr10g0304991' => 'han', 'HanXRQChr16g0505421' => 'han', 'Haze_22927' => 'cav', 'Haze_26172' => 'cav', 'Hma1.2p1_0386F.1_g141790' => 'hma', 'HPP92_007933' => 'vpl', 'HPP92_007950' => 'vpl', 'HPP92_007951' => 'vpl', 'HPP92_019524' => 'vpl', 'Hund02026' => 'sun', 'Hund02027' => 'sun', 'Hund05839' => 'sun', 'Hund06196' => 'sun', 'Lalb_Chr07g0190661' => 'lal', 'Lalb_Chr07g0190671' => 'lal', 'Lalb_Chr12g0207601' => 'lal', 'Lj1A1137T82' => 'lonja', 'Lj1g0012267' => 'lja', 'Lj1g0021223' => 'lja', 'Lj2A357G78' => 'lonja', 'Lj3g0010186' => 'lja', 'Lsat_1_v5_gn_5_120581' => 'lsa', 'Lsat_1_v5_gn_6_55861' => 'lsa', 'Lsat_1_v5_gn_6_55920' => 'lsa', 'Lsat_1_v5_gn_7_91520' => 'lsa', 'Lsat_1_v5_gn_9_108101' => 'lsa', 'Manes.08G149100' => 'mes', 'Manes.09G142800' => 'mes', 'Mapoly0025s0099' => 'mpo', 'MBI11_g05457_MAGBIO' => 'mbi', 'MBI11_g05458_MAGBIO' => 'mbi', 'MCO16G423' => 'mco', 'MD03G1002100' => 'mdo', 'MD11G1002100' => 'mdo', 'MD12G1002700' => 'mdo', 'MD12G1176800' => 'mdo', 'MD14G1002000' => 'mdo', 'Medtr3g065900' => 'mtr', 'Medtr3g066070' => 'mtr', 'Medtr4g029010' => 'mtr', 'Medtr4g122610' => 'mtr', 'Medtr4g122635' => 'mtr', 'Medtr7g072580' => 'mtr', 'MELO3C015563.2' => 'cme', 'MSTRG.18035' => 'ama', 'MSTRG.20933' => 'ama', 'Nitab4.5_0000001g0040' => 'nta', 'Nitab4.5_0000911g0050' => 'nta', 'Nitab4.5_0002068g0060' => 'nta', 'Nn2g15884' => 'nnu', 'Nn7g35830' => 'nnu', 'Oeu022083.1' => 'oeu', 'Oeu023972.1' => 'oeu', 'Oeu060895.2' => 'oeu', 'Os03g0657000' => 'osa', 'Os12g0580300' => 'osa', 'Peaxi162Scf00076g01050' => 'pax', 'PGR119G0518' => 'pgr', 'PGR142G4380' => 'pgr', 'Phvul.001G076800' => 'pvu', 'Phvul.006G062900' => 'pvu', 'Phvul.010G081500' => 'pvu', 'Potri.013G059300' => 'ptr', 'Potri.019G033300' => 'ptr', 'Pp3c12_4720' => 'ppa', 'Pp3c4_16100' => 'ppa', 'PRCOL_00000348' => 'pco', 'Prupe.6G001900' => 'ppe', 'Prupe.7G002500' => 'ppe', 'Prupe.7G002800' => 'ppe', 'Psat0s1135g0040' => 'psa', 'Psat0s1135g0240' => 'psa', 'Psat2g055000' => 'psa', 'Psat3g121040' => 'psa', 'Psat5g121280' => 'psa', 'Psat7g230160' => 'psa', 'PSO170G4543' => 'pso', 'PSO339G0900' => 'pso', 'PSO339G4383' => 'pso', 'PSO339G5032' => 'pso', 'PSO384G4207' => 'pso', 'PSO478G4144' => 'pso', 'QL01p010469' => 'qlo', 'QL01p010488' => 'qlo', 'RcHm_v2.0_Chr3g0463861' => 'rch', 'RcHm_v2.0_Chr3g0497421' => 'rch', 'RcHm_v2.0_Chr5g0059361' => 'rch', 'RcHm_v2.0_Chr5g0083961' => 'rch', 'Rhsim04G0087100' => 'rsi', 'Rhsim13G0234100' => 'rsi', 'Sabra13G0052700' => 'sbr', 'SalBow2G3503' => 'sbo', 'SalBow6G3197' => 'sbo', 'SalBow6G5773' => 'sbo', 'Sc14g0001670' => 'sci', 'Sed0009576' => 'sed', 'Sed0023057' => 'sed', 'SEGI_36240' => 'sgi', 'SGA_v2.0_scaffold3G01690' => 'sas', 'SGA_v2.0_scaffold3G01709' => 'sas', 'SGA_v2.0_scaffold6G03327' => 'sas', 'SHI25601' => 'shi', 'SMO116G0412' => 'smo', 'SMO361G0654' => 'smo', 'Solyc01g028930.4' => 'sly', 'Solyc01g150102.1' => 'sly', 'Sopen01g003560' => 'spe', 'Sopen01g017150' => 'spe', 'Sp1g41130' => 'spa', 'Sp3g11650' => 'spa', 'Sp6g36230' => 'spa', 'TAR623G0107' => 'tar', 'TAR633G2813' => 'tar', 'THA.LOC104805745' => 'tha', 'THA.LOC104805757' => 'tha', 'THA.LOC104805761' => 'tha', 'THA.LOC104822696' => 'tha', 'Thecc.01G125100' => 'tca', 'Thecc.01G125200' => 'tca', 'Thecc.01G125400' => 'tca', 'Thecc.05G236100' => 'tca', 'Thecc.05G293200' => 'tca', 'Thhalv10011790m.g' => 'esa', 'Thhalv10021552m.g' => 'esa', 'Thhalv10022351m.g' => 'esa', 'TPR.G19738' => 'tpr', 'TWI09G0349' => 'twi', 'TWI09G1209' => 'twi', 'TWI34G0344' => 'twi', 'TWI53G0967' => 'twi', 'unitig_37.g13064' => 'ugi', 'vmacro04260' => 'vma', 'vmacro04269' => 'vma', 'vmacro09145' => 'vma', 'Zm00001eb002410' => 'zma', 'Zm00001eb052680' => 'zma', 'Zm00001eb218190' => 'zma', 'Zm00001eb220320' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D002140' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D002140' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D002140' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002140' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D002140', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '313', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p02790' => 'bna', 'A03p02810' => 'bna', 'A05p17440' => 'bna', 'A05p36090' => 'bna', 'A08p00600' => 'bna', 'A09p66520' => 'bna', 'Aa31LG10G730' => 'aar', 'Aa31LG8G660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2864' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4395' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3347' => 'aag', 'Actinidia00913' => 'ach', 'Actinidia16231' => 'ach', 'Actinidia22092' => 'ach', 'Actinidia37353' => 'ach', 'Actinidia38617' => 'ach', 'Ah.01g006490' => 'amhyb', 'Ah.08g222790' => 'amhyb', 'AL1G63540' => 'aly', 'Aqoxy5G04361' => 'aox', 'Aqoxy7G00924' => 'aox', 'arahy.Tifrunner.gnm1.ann1.286I7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5NK5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1DIDD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SM1QYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQ84UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5KUV8' => 'arhy', 'AT1G55520' => 'ath', 'AT3G13445' => 'ath', 'ATR0580G369' => 'atr', 'ATR0749G036' => 'atr', 'ATR0752G012' => 'atr', 'ATR0827G027' => 'atr', 'ATR0827G165' => 'atr', 'Atru.chr11.919' => 'acertr', 'Atru.chr2.1343' => 'acertr', 'AUR62001610' => 'cqu', 'AUR62011411' => 'cqu', 'AUR62016648' => 'cqu', 'AUR62020170' => 'cqu', 'AUR62027761' => 'cqu', 'BcaB01g05997' => 'bca', 'BcaB02g10818' => 'bca', 'BcaB04g16953' => 'bca', 'BcaB05g21658' => 'bca', 'BcaB05g21659' => 'bca', 'BcaB07g33210' => 'bca', 'BcaC01g01531' => 'bca', 'BcaC05g28734' => 'bca', 'BcaC05g29179' => 'bca', 'BcaC07g42013' => 'bca', 'BcaC08g43629' => 'bca', 'BcaC08g44201' => 'bca', 'BcaNung06580' => 'bca', 'BolC2t06243H' => 'bol', 'BolC3t12866H' => 'bol', 'BolC3t21589H' => 'bol', 'BolC5t33572H' => 'bol', 'BolC5t34114H' => 'bol', 'BolC6t36124H' => 'bol', 'BolC6t36808H' => 'bol', 'BolC8t52597H' => 'bol', 'BraA02t04886Z' => 'bra', 'BraA03t09642Z' => 'bra', 'BraA03t09644Z' => 'bra', 'BraA05t20639Z' => 'bra', 'BraA05t22416Z' => 'bra', 'BraA08t32117Z' => 'bra', 'C02p02780' => 'bna', 'C03p03210' => 'bna', 'C03p92830' => 'bna', 'C05p54470' => 'bna', 'C06p10460' => 'bna', 'C06p16090' => 'bna', 'C08p50690' => 'bna', 'CAN.G245.1' => 'can', 'CAN.G282.67' => 'can', 'CANSAT21G0818' => 'cansat', 'CANSAT25G2162' => 'cansat', 'CARHR045200' => 'chi', 'CARHR088100' => 'chi', 'Carub.0001s4401' => 'cru', 'Carub.0003s1289' => 'cru', 'Ca_19770_v3' => 'car', 'Cc00_g08900' => 'ccan', 'Cc01_g00250' => 'ccan', 'Cc02_g02090' => 'ccan', 'CDE02G2982' => 'cde', 'CDE04G0346' => 'cde', 'CDE05G0267' => 'cde', 'CDE05G3016' => 'cde', 'CDE07G0215' => 'cde', 'CDE10G0940' => 'cde', 'Cfa009536' => 'cfa', 'Cfa009539' => 'cfa', 'Cfa009542' => 'cfa', 'Ciclev10033950m.g' => 'ccl', 'CiPaw.02G041800' => 'cil', 'CiPaw.05G071700' => 'cil', 'CiPaw.13G178600' => 'cil', 'ClCG03G012090' => 'cla', 'ClCG03G012100' => 'cla', 'ClCG03G014640' => 'cla', 'ClCG03G014650' => 'cla', 'COL.COLO4_00049' => 'col', 'COL.COLO4_13616' => 'col', 'COL.COLO4_14003' => 'col', 'COL.COLO4_33701' => 'col', 'COL.COLO4_34140' => 'col', 'COL.COLO4_35337' => 'col', 'Cpa.g.sc51.95' => 'cpa', 'Cre12.g505700' => 'cre', 'CsaV3_1G041520' => 'csa', 'CSS0013302' => 'camsi', 'DCAR_009248' => 'dca', 'DCAR_016867' => 'dca', 'Dinv13486' => 'din', 'Dinv37008' => 'din', 'Duzib106G0023' => 'dzi', 'Duzib106G0138' => 'dzi', 'Duzib106G0576' => 'dzi', 'Duzib106G1867' => 'dzi', 'Duzib128G0762' => 'dzi', 'Duzib160G0419' => 'dzi', 'Duzib177G0320' => 'dzi', 'Duzib177G0568' => 'dzi', 'ECA233G0802' => 'eca', 'ECA233G1438' => 'eca', 'ECA236G4430' => 'eca', 'ECA240G1881' => 'eca', 'EL10Ac7g16222' => 'bvu', 'EL10Ac9g21802' => 'bvu', 'Eucgr.K01483' => 'egr', 'FAN02G2560' => 'fan', 'FAN05G1025' => 'fan', 'FAN07G1359' => 'fan', 'FAN09G1843' => 'fan', 'FAN11G0913' => 'fan', 'FAN11G2433' => 'fan', 'FAN11G3828' => 'fan', 'FAN14G2253' => 'fan', 'FAN14G2542' => 'fan', 'FAN16G1873' => 'fan', 'FAN19G0703' => 'fan', 'FAN21G1264' => 'fan', 'FAN21G1962' => 'fan', 'FAN23G1243' => 'fan', 'FAN25G0154' => 'fan', 'FAN25G3655' => 'fan', 'FAN26G1633' => 'fan', 'FAN28G1683' => 'fan', 'FAN28G2179' => 'fan', 'FvH4_1g28010' => 'fve', 'FvH4_3g32401' => 'fve', 'FvH4_3g32403' => 'fve', 'FvH4_3g32450' => 'fve', 'FvH4_3g45850' => 'fve', 'FvH4_4g21060' => 'fve', 'FvH4_6g12030' => 'fve', 'Glyma.02G057100' => 'gma', 'Glyma.03G036800' => 'gma', 'Glyma.09G276900' => 'gma', 'Glyma.16G140200' => 'gma', 'Glyma.18G212300' => 'gma', 'Glyma.19G111200' => 'gma', 'Gohir.A08G213400' => 'ghi', 'Gohir.A11G258300' => 'ghi', 'Gohir.A13G171800' => 'ghi', 'Gohir.D08G230500' => 'ghi', 'Gohir.D11G268300' => 'ghi', 'Gohir.D13G177600' => 'ghi', 'Gorai.013G202900' => 'gra', 'GSVIVG01025497001' => 'vvi', 'HanXRQChr03g0069271' => 'han', 'HanXRQChr10g0304991' => 'han', 'HanXRQChr16g0505421' => 'han', 'Haze_22927' => 'cav', 'Haze_26172' => 'cav', 'Hma1.2p1_0386F.1_g141790' => 'hma', 'HPP92_007933' => 'vpl', 'HPP92_007950' => 'vpl', 'HPP92_007951' => 'vpl', 'HPP92_019524' => 'vpl', 'Hund02026' => 'sun', 'Hund02027' => 'sun', 'Hund05839' => 'sun', 'Hund06196' => 'sun', 'Lalb_Chr07g0190661' => 'lal', 'Lalb_Chr07g0190671' => 'lal', 'Lalb_Chr12g0207601' => 'lal', 'Lj1A1137T82' => 'lonja', 'Lj1g0012267' => 'lja', 'Lj1g0021223' => 'lja', 'Lj2A357G78' => 'lonja', 'Lj3g0010186' => 'lja', 'Lsat_1_v5_gn_5_120581' => 'lsa', 'Lsat_1_v5_gn_6_55861' => 'lsa', 'Lsat_1_v5_gn_6_55920' => 'lsa', 'Lsat_1_v5_gn_7_91520' => 'lsa', 'Lsat_1_v5_gn_9_108101' => 'lsa', 'Manes.08G149100' => 'mes', 'Manes.09G142800' => 'mes', 'Mapoly0025s0099' => 'mpo', 'MBI11_g05457_MAGBIO' => 'mbi', 'MBI11_g05458_MAGBIO' => 'mbi', 'MCO16G423' => 'mco', 'MD03G1002100' => 'mdo', 'MD11G1002100' => 'mdo', 'MD12G1002700' => 'mdo', 'MD12G1176800' => 'mdo', 'MD14G1002000' => 'mdo', 'Medtr3g065900' => 'mtr', 'Medtr3g066070' => 'mtr', 'Medtr4g029010' => 'mtr', 'Medtr4g122610' => 'mtr', 'Medtr4g122635' => 'mtr', 'Medtr7g072580' => 'mtr', 'MELO3C015563.2' => 'cme', 'MSTRG.18035' => 'ama', 'MSTRG.20933' => 'ama', 'Nitab4.5_0000001g0040' => 'nta', 'Nitab4.5_0000911g0050' => 'nta', 'Nitab4.5_0002068g0060' => 'nta', 'Nn2g15884' => 'nnu', 'Nn7g35830' => 'nnu', 'Oeu022083.1' => 'oeu', 'Oeu023972.1' => 'oeu', 'Oeu060895.2' => 'oeu', 'Os03g0657000' => 'osa', 'Os12g0580300' => 'osa', 'Peaxi162Scf00076g01050' => 'pax', 'PGR119G0518' => 'pgr', 'PGR142G4380' => 'pgr', 'Phvul.001G076800' => 'pvu', 'Phvul.006G062900' => 'pvu', 'Phvul.010G081500' => 'pvu', 'Potri.013G059300' => 'ptr', 'Potri.019G033300' => 'ptr', 'Pp3c12_4720' => 'ppa', 'Pp3c4_16100' => 'ppa', 'PRCOL_00000348' => 'pco', 'Prupe.6G001900' => 'ppe', 'Prupe.7G002500' => 'ppe', 'Prupe.7G002800' => 'ppe', 'Psat0s1135g0040' => 'psa', 'Psat0s1135g0240' => 'psa', 'Psat2g055000' => 'psa', 'Psat3g121040' => 'psa', 'Psat5g121280' => 'psa', 'Psat7g230160' => 'psa', 'PSO170G4543' => 'pso', 'PSO339G0900' => 'pso', 'PSO339G4383' => 'pso', 'PSO339G5032' => 'pso', 'PSO384G4207' => 'pso', 'PSO478G4144' => 'pso', 'QL01p010469' => 'qlo', 'QL01p010488' => 'qlo', 'RcHm_v2.0_Chr3g0463861' => 'rch', 'RcHm_v2.0_Chr3g0497421' => 'rch', 'RcHm_v2.0_Chr5g0059361' => 'rch', 'RcHm_v2.0_Chr5g0083961' => 'rch', 'Rhsim04G0087100' => 'rsi', 'Rhsim13G0234100' => 'rsi', 'Sabra13G0052700' => 'sbr', 'SalBow2G3503' => 'sbo', 'SalBow6G3197' => 'sbo', 'SalBow6G5773' => 'sbo', 'Sc14g0001670' => 'sci', 'Sed0009576' => 'sed', 'Sed0023057' => 'sed', 'SEGI_36240' => 'sgi', 'SGA_v2.0_scaffold3G01690' => 'sas', 'SGA_v2.0_scaffold3G01709' => 'sas', 'SGA_v2.0_scaffold6G03327' => 'sas', 'SHI25601' => 'shi', 'SMO116G0412' => 'smo', 'SMO361G0654' => 'smo', 'Solyc01g028930.4' => 'sly', 'Solyc01g150102.1' => 'sly', 'Sopen01g003560' => 'spe', 'Sopen01g017150' => 'spe', 'Sp1g41130' => 'spa', 'Sp3g11650' => 'spa', 'Sp6g36230' => 'spa', 'TAR623G0107' => 'tar', 'TAR633G2813' => 'tar', 'THA.LOC104805745' => 'tha', 'THA.LOC104805757' => 'tha', 'THA.LOC104805761' => 'tha', 'THA.LOC104822696' => 'tha', 'Thecc.01G125100' => 'tca', 'Thecc.01G125200' => 'tca', 'Thecc.01G125400' => 'tca', 'Thecc.05G236100' => 'tca', 'Thecc.05G293200' => 'tca', 'Thhalv10011790m.g' => 'esa', 'Thhalv10021552m.g' => 'esa', 'Thhalv10022351m.g' => 'esa', 'TPR.G19738' => 'tpr', 'TWI09G0349' => 'twi', 'TWI09G1209' => 'twi', 'TWI34G0344' => 'twi', 'TWI53G0967' => 'twi', 'unitig_37.g13064' => 'ugi', 'vmacro04260' => 'vma', 'vmacro04269' => 'vma', 'vmacro09145' => 'vma', 'Zm00001eb002410' => 'zma', 'Zm00001eb052680' => 'zma', 'Zm00001eb218190' => 'zma', 'Zm00001eb220320' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D002140', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D002140' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D002140', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '313', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002140' ) ), 'genes' => array( 'A03p02790' => 'bna', 'A03p02810' => 'bna', 'A05p17440' => 'bna', 'A05p36090' => 'bna', 'A08p00600' => 'bna', 'A09p66520' => 'bna', 'Aa31LG10G730' => 'aar', 'Aa31LG8G660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2864' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4395' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3347' => 'aag', 'Actinidia00913' => 'ach', 'Actinidia16231' => 'ach', 'Actinidia22092' => 'ach', 'Actinidia37353' => 'ach', 'Actinidia38617' => 'ach', 'Ah.01g006490' => 'amhyb', 'Ah.08g222790' => 'amhyb', 'AL1G63540' => 'aly', 'Aqoxy5G04361' => 'aox', 'Aqoxy7G00924' => 'aox', 'arahy.Tifrunner.gnm1.ann1.286I7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5NK5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1DIDD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SM1QYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQ84UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5KUV8' => 'arhy', 'AT1G55520' => 'ath', 'AT3G13445' => 'ath', 'ATR0580G369' => 'atr', 'ATR0749G036' => 'atr', 'ATR0752G012' => 'atr', 'ATR0827G027' => 'atr', 'ATR0827G165' => 'atr', 'Atru.chr11.919' => 'acertr', 'Atru.chr2.1343' => 'acertr', 'AUR62001610' => 'cqu', 'AUR62011411' => 'cqu', 'AUR62016648' => 'cqu', 'AUR62020170' => 'cqu', 'AUR62027761' => 'cqu', 'BcaB01g05997' => 'bca', 'BcaB02g10818' => 'bca', 'BcaB04g16953' => 'bca', 'BcaB05g21658' => 'bca', 'BcaB05g21659' => 'bca', 'BcaB07g33210' => 'bca', 'BcaC01g01531' => 'bca', 'BcaC05g28734' => 'bca', 'BcaC05g29179' => 'bca', 'BcaC07g42013' => 'bca', 'BcaC08g43629' => 'bca', 'BcaC08g44201' => 'bca', 'BcaNung06580' => 'bca', 'BolC2t06243H' => 'bol', 'BolC3t12866H' => 'bol', 'BolC3t21589H' => 'bol', 'BolC5t33572H' => 'bol', 'BolC5t34114H' => 'bol', 'BolC6t36124H' => 'bol', 'BolC6t36808H' => 'bol', 'BolC8t52597H' => 'bol', 'BraA02t04886Z' => 'bra', 'BraA03t09642Z' => 'bra', 'BraA03t09644Z' => 'bra', 'BraA05t20639Z' => 'bra', 'BraA05t22416Z' => 'bra', 'BraA08t32117Z' => 'bra', 'C02p02780' => 'bna', 'C03p03210' => 'bna', 'C03p92830' => 'bna', 'C05p54470' => 'bna', 'C06p10460' => 'bna', 'C06p16090' => 'bna', 'C08p50690' => 'bna', 'CAN.G245.1' => 'can', 'CAN.G282.67' => 'can', 'CANSAT21G0818' => 'cansat', 'CANSAT25G2162' => 'cansat', 'CARHR045200' => 'chi', 'CARHR088100' => 'chi', 'Carub.0001s4401' => 'cru', 'Carub.0003s1289' => 'cru', 'Ca_19770_v3' => 'car', 'Cc00_g08900' => 'ccan', 'Cc01_g00250' => 'ccan', 'Cc02_g02090' => 'ccan', 'CDE02G2982' => 'cde', 'CDE04G0346' => 'cde', 'CDE05G0267' => 'cde', 'CDE05G3016' => 'cde', 'CDE07G0215' => 'cde', 'CDE10G0940' => 'cde', 'Cfa009536' => 'cfa', 'Cfa009539' => 'cfa', 'Cfa009542' => 'cfa', 'Ciclev10033950m.g' => 'ccl', 'CiPaw.02G041800' => 'cil', 'CiPaw.05G071700' => 'cil', 'CiPaw.13G178600' => 'cil', 'ClCG03G012090' => 'cla', 'ClCG03G012100' => 'cla', 'ClCG03G014640' => 'cla', 'ClCG03G014650' => 'cla', 'COL.COLO4_00049' => 'col', 'COL.COLO4_13616' => 'col', 'COL.COLO4_14003' => 'col', 'COL.COLO4_33701' => 'col', 'COL.COLO4_34140' => 'col', 'COL.COLO4_35337' => 'col', 'Cpa.g.sc51.95' => 'cpa', 'Cre12.g505700' => 'cre', 'CsaV3_1G041520' => 'csa', 'CSS0013302' => 'camsi', 'DCAR_009248' => 'dca', 'DCAR_016867' => 'dca', 'Dinv13486' => 'din', 'Dinv37008' => 'din', 'Duzib106G0023' => 'dzi', 'Duzib106G0138' => 'dzi', 'Duzib106G0576' => 'dzi', 'Duzib106G1867' => 'dzi', 'Duzib128G0762' => 'dzi', 'Duzib160G0419' => 'dzi', 'Duzib177G0320' => 'dzi', 'Duzib177G0568' => 'dzi', 'ECA233G0802' => 'eca', 'ECA233G1438' => 'eca', 'ECA236G4430' => 'eca', 'ECA240G1881' => 'eca', 'EL10Ac7g16222' => 'bvu', 'EL10Ac9g21802' => 'bvu', 'Eucgr.K01483' => 'egr', 'FAN02G2560' => 'fan', 'FAN05G1025' => 'fan', 'FAN07G1359' => 'fan', 'FAN09G1843' => 'fan', 'FAN11G0913' => 'fan', 'FAN11G2433' => 'fan', 'FAN11G3828' => 'fan', 'FAN14G2253' => 'fan', 'FAN14G2542' => 'fan', 'FAN16G1873' => 'fan', 'FAN19G0703' => 'fan', 'FAN21G1264' => 'fan', 'FAN21G1962' => 'fan', 'FAN23G1243' => 'fan', 'FAN25G0154' => 'fan', 'FAN25G3655' => 'fan', 'FAN26G1633' => 'fan', 'FAN28G1683' => 'fan', 'FAN28G2179' => 'fan', 'FvH4_1g28010' => 'fve', 'FvH4_3g32401' => 'fve', 'FvH4_3g32403' => 'fve', 'FvH4_3g32450' => 'fve', 'FvH4_3g45850' => 'fve', 'FvH4_4g21060' => 'fve', 'FvH4_6g12030' => 'fve', 'Glyma.02G057100' => 'gma', 'Glyma.03G036800' => 'gma', 'Glyma.09G276900' => 'gma', 'Glyma.16G140200' => 'gma', 'Glyma.18G212300' => 'gma', 'Glyma.19G111200' => 'gma', 'Gohir.A08G213400' => 'ghi', 'Gohir.A11G258300' => 'ghi', 'Gohir.A13G171800' => 'ghi', 'Gohir.D08G230500' => 'ghi', 'Gohir.D11G268300' => 'ghi', 'Gohir.D13G177600' => 'ghi', 'Gorai.013G202900' => 'gra', 'GSVIVG01025497001' => 'vvi', 'HanXRQChr03g0069271' => 'han', 'HanXRQChr10g0304991' => 'han', 'HanXRQChr16g0505421' => 'han', 'Haze_22927' => 'cav', 'Haze_26172' => 'cav', 'Hma1.2p1_0386F.1_g141790' => 'hma', 'HPP92_007933' => 'vpl', 'HPP92_007950' => 'vpl', 'HPP92_007951' => 'vpl', 'HPP92_019524' => 'vpl', 'Hund02026' => 'sun', 'Hund02027' => 'sun', 'Hund05839' => 'sun', 'Hund06196' => 'sun', 'Lalb_Chr07g0190661' => 'lal', 'Lalb_Chr07g0190671' => 'lal', 'Lalb_Chr12g0207601' => 'lal', 'Lj1A1137T82' => 'lonja', 'Lj1g0012267' => 'lja', 'Lj1g0021223' => 'lja', 'Lj2A357G78' => 'lonja', 'Lj3g0010186' => 'lja', 'Lsat_1_v5_gn_5_120581' => 'lsa', 'Lsat_1_v5_gn_6_55861' => 'lsa', 'Lsat_1_v5_gn_6_55920' => 'lsa', 'Lsat_1_v5_gn_7_91520' => 'lsa', 'Lsat_1_v5_gn_9_108101' => 'lsa', 'Manes.08G149100' => 'mes', 'Manes.09G142800' => 'mes', 'Mapoly0025s0099' => 'mpo', 'MBI11_g05457_MAGBIO' => 'mbi', 'MBI11_g05458_MAGBIO' => 'mbi', 'MCO16G423' => 'mco', 'MD03G1002100' => 'mdo', 'MD11G1002100' => 'mdo', 'MD12G1002700' => 'mdo', 'MD12G1176800' => 'mdo', 'MD14G1002000' => 'mdo', 'Medtr3g065900' => 'mtr', 'Medtr3g066070' => 'mtr', 'Medtr4g029010' => 'mtr', 'Medtr4g122610' => 'mtr', 'Medtr4g122635' => 'mtr', 'Medtr7g072580' => 'mtr', 'MELO3C015563.2' => 'cme', 'MSTRG.18035' => 'ama', 'MSTRG.20933' => 'ama', 'Nitab4.5_0000001g0040' => 'nta', 'Nitab4.5_0000911g0050' => 'nta', 'Nitab4.5_0002068g0060' => 'nta', 'Nn2g15884' => 'nnu', 'Nn7g35830' => 'nnu', 'Oeu022083.1' => 'oeu', 'Oeu023972.1' => 'oeu', 'Oeu060895.2' => 'oeu', 'Os03g0657000' => 'osa', 'Os12g0580300' => 'osa', 'Peaxi162Scf00076g01050' => 'pax', 'PGR119G0518' => 'pgr', 'PGR142G4380' => 'pgr', 'Phvul.001G076800' => 'pvu', 'Phvul.006G062900' => 'pvu', 'Phvul.010G081500' => 'pvu', 'Potri.013G059300' => 'ptr', 'Potri.019G033300' => 'ptr', 'Pp3c12_4720' => 'ppa', 'Pp3c4_16100' => 'ppa', 'PRCOL_00000348' => 'pco', 'Prupe.6G001900' => 'ppe', 'Prupe.7G002500' => 'ppe', 'Prupe.7G002800' => 'ppe', 'Psat0s1135g0040' => 'psa', 'Psat0s1135g0240' => 'psa', 'Psat2g055000' => 'psa', 'Psat3g121040' => 'psa', 'Psat5g121280' => 'psa', 'Psat7g230160' => 'psa', 'PSO170G4543' => 'pso', 'PSO339G0900' => 'pso', 'PSO339G4383' => 'pso', 'PSO339G5032' => 'pso', 'PSO384G4207' => 'pso', 'PSO478G4144' => 'pso', 'QL01p010469' => 'qlo', 'QL01p010488' => 'qlo', 'RcHm_v2.0_Chr3g0463861' => 'rch', 'RcHm_v2.0_Chr3g0497421' => 'rch', 'RcHm_v2.0_Chr5g0059361' => 'rch', 'RcHm_v2.0_Chr5g0083961' => 'rch', 'Rhsim04G0087100' => 'rsi', 'Rhsim13G0234100' => 'rsi', 'Sabra13G0052700' => 'sbr', 'SalBow2G3503' => 'sbo', 'SalBow6G3197' => 'sbo', 'SalBow6G5773' => 'sbo', 'Sc14g0001670' => 'sci', 'Sed0009576' => 'sed', 'Sed0023057' => 'sed', 'SEGI_36240' => 'sgi', 'SGA_v2.0_scaffold3G01690' => 'sas', 'SGA_v2.0_scaffold3G01709' => 'sas', 'SGA_v2.0_scaffold6G03327' => 'sas', 'SHI25601' => 'shi', 'SMO116G0412' => 'smo', 'SMO361G0654' => 'smo', 'Solyc01g028930.4' => 'sly', 'Solyc01g150102.1' => 'sly', 'Sopen01g003560' => 'spe', 'Sopen01g017150' => 'spe', 'Sp1g41130' => 'spa', 'Sp3g11650' => 'spa', 'Sp6g36230' => 'spa', 'TAR623G0107' => 'tar', 'TAR633G2813' => 'tar', 'THA.LOC104805745' => 'tha', 'THA.LOC104805757' => 'tha', 'THA.LOC104805761' => 'tha', 'THA.LOC104822696' => 'tha', 'Thecc.01G125100' => 'tca', 'Thecc.01G125200' => 'tca', 'Thecc.01G125400' => 'tca', 'Thecc.05G236100' => 'tca', 'Thecc.05G293200' => 'tca', 'Thhalv10011790m.g' => 'esa', 'Thhalv10021552m.g' => 'esa', 'Thhalv10022351m.g' => 'esa', 'TPR.G19738' => 'tpr', 'TWI09G0349' => 'twi', 'TWI09G1209' => 'twi', 'TWI34G0344' => 'twi', 'TWI53G0967' => 'twi', 'unitig_37.g13064' => 'ugi', 'vmacro04260' => 'vma', 'vmacro04269' => 'vma', 'vmacro09145' => 'vma', 'Zm00001eb002410' => 'zma', 'Zm00001eb052680' => 'zma', 'Zm00001eb218190' => 'zma', 'Zm00001eb220320' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D002140' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D002140' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D002140' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002140' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D002140', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '313', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p02790' => 'bna', 'A03p02810' => 'bna', 'A05p17440' => 'bna', 'A05p36090' => 'bna', 'A08p00600' => 'bna', 'A09p66520' => 'bna', 'Aa31LG10G730' => 'aar', 'Aa31LG8G660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2864' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4395' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3347' => 'aag', 'Actinidia00913' => 'ach', 'Actinidia16231' => 'ach', 'Actinidia22092' => 'ach', 'Actinidia37353' => 'ach', 'Actinidia38617' => 'ach', 'Ah.01g006490' => 'amhyb', 'Ah.08g222790' => 'amhyb', 'AL1G63540' => 'aly', 'Aqoxy5G04361' => 'aox', 'Aqoxy7G00924' => 'aox', 'arahy.Tifrunner.gnm1.ann1.286I7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5NK5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1DIDD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SM1QYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQ84UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5KUV8' => 'arhy', 'AT1G55520' => 'ath', 'AT3G13445' => 'ath', 'ATR0580G369' => 'atr', 'ATR0749G036' => 'atr', 'ATR0752G012' => 'atr', 'ATR0827G027' => 'atr', 'ATR0827G165' => 'atr', 'Atru.chr11.919' => 'acertr', 'Atru.chr2.1343' => 'acertr', 'AUR62001610' => 'cqu', 'AUR62011411' => 'cqu', 'AUR62016648' => 'cqu', 'AUR62020170' => 'cqu', 'AUR62027761' => 'cqu', 'BcaB01g05997' => 'bca', 'BcaB02g10818' => 'bca', 'BcaB04g16953' => 'bca', 'BcaB05g21658' => 'bca', 'BcaB05g21659' => 'bca', 'BcaB07g33210' => 'bca', 'BcaC01g01531' => 'bca', 'BcaC05g28734' => 'bca', 'BcaC05g29179' => 'bca', 'BcaC07g42013' => 'bca', 'BcaC08g43629' => 'bca', 'BcaC08g44201' => 'bca', 'BcaNung06580' => 'bca', 'BolC2t06243H' => 'bol', 'BolC3t12866H' => 'bol', 'BolC3t21589H' => 'bol', 'BolC5t33572H' => 'bol', 'BolC5t34114H' => 'bol', 'BolC6t36124H' => 'bol', 'BolC6t36808H' => 'bol', 'BolC8t52597H' => 'bol', 'BraA02t04886Z' => 'bra', 'BraA03t09642Z' => 'bra', 'BraA03t09644Z' => 'bra', 'BraA05t20639Z' => 'bra', 'BraA05t22416Z' => 'bra', 'BraA08t32117Z' => 'bra', 'C02p02780' => 'bna', 'C03p03210' => 'bna', 'C03p92830' => 'bna', 'C05p54470' => 'bna', 'C06p10460' => 'bna', 'C06p16090' => 'bna', 'C08p50690' => 'bna', 'CAN.G245.1' => 'can', 'CAN.G282.67' => 'can', 'CANSAT21G0818' => 'cansat', 'CANSAT25G2162' => 'cansat', 'CARHR045200' => 'chi', 'CARHR088100' => 'chi', 'Carub.0001s4401' => 'cru', 'Carub.0003s1289' => 'cru', 'Ca_19770_v3' => 'car', 'Cc00_g08900' => 'ccan', 'Cc01_g00250' => 'ccan', 'Cc02_g02090' => 'ccan', 'CDE02G2982' => 'cde', 'CDE04G0346' => 'cde', 'CDE05G0267' => 'cde', 'CDE05G3016' => 'cde', 'CDE07G0215' => 'cde', 'CDE10G0940' => 'cde', 'Cfa009536' => 'cfa', 'Cfa009539' => 'cfa', 'Cfa009542' => 'cfa', 'Ciclev10033950m.g' => 'ccl', 'CiPaw.02G041800' => 'cil', 'CiPaw.05G071700' => 'cil', 'CiPaw.13G178600' => 'cil', 'ClCG03G012090' => 'cla', 'ClCG03G012100' => 'cla', 'ClCG03G014640' => 'cla', 'ClCG03G014650' => 'cla', 'COL.COLO4_00049' => 'col', 'COL.COLO4_13616' => 'col', 'COL.COLO4_14003' => 'col', 'COL.COLO4_33701' => 'col', 'COL.COLO4_34140' => 'col', 'COL.COLO4_35337' => 'col', 'Cpa.g.sc51.95' => 'cpa', 'Cre12.g505700' => 'cre', 'CsaV3_1G041520' => 'csa', 'CSS0013302' => 'camsi', 'DCAR_009248' => 'dca', 'DCAR_016867' => 'dca', 'Dinv13486' => 'din', 'Dinv37008' => 'din', 'Duzib106G0023' => 'dzi', 'Duzib106G0138' => 'dzi', 'Duzib106G0576' => 'dzi', 'Duzib106G1867' => 'dzi', 'Duzib128G0762' => 'dzi', 'Duzib160G0419' => 'dzi', 'Duzib177G0320' => 'dzi', 'Duzib177G0568' => 'dzi', 'ECA233G0802' => 'eca', 'ECA233G1438' => 'eca', 'ECA236G4430' => 'eca', 'ECA240G1881' => 'eca', 'EL10Ac7g16222' => 'bvu', 'EL10Ac9g21802' => 'bvu', 'Eucgr.K01483' => 'egr', 'FAN02G2560' => 'fan', 'FAN05G1025' => 'fan', 'FAN07G1359' => 'fan', 'FAN09G1843' => 'fan', 'FAN11G0913' => 'fan', 'FAN11G2433' => 'fan', 'FAN11G3828' => 'fan', 'FAN14G2253' => 'fan', 'FAN14G2542' => 'fan', 'FAN16G1873' => 'fan', 'FAN19G0703' => 'fan', 'FAN21G1264' => 'fan', 'FAN21G1962' => 'fan', 'FAN23G1243' => 'fan', 'FAN25G0154' => 'fan', 'FAN25G3655' => 'fan', 'FAN26G1633' => 'fan', 'FAN28G1683' => 'fan', 'FAN28G2179' => 'fan', 'FvH4_1g28010' => 'fve', 'FvH4_3g32401' => 'fve', 'FvH4_3g32403' => 'fve', 'FvH4_3g32450' => 'fve', 'FvH4_3g45850' => 'fve', 'FvH4_4g21060' => 'fve', 'FvH4_6g12030' => 'fve', 'Glyma.02G057100' => 'gma', 'Glyma.03G036800' => 'gma', 'Glyma.09G276900' => 'gma', 'Glyma.16G140200' => 'gma', 'Glyma.18G212300' => 'gma', 'Glyma.19G111200' => 'gma', 'Gohir.A08G213400' => 'ghi', 'Gohir.A11G258300' => 'ghi', 'Gohir.A13G171800' => 'ghi', 'Gohir.D08G230500' => 'ghi', 'Gohir.D11G268300' => 'ghi', 'Gohir.D13G177600' => 'ghi', 'Gorai.013G202900' => 'gra', 'GSVIVG01025497001' => 'vvi', 'HanXRQChr03g0069271' => 'han', 'HanXRQChr10g0304991' => 'han', 'HanXRQChr16g0505421' => 'han', 'Haze_22927' => 'cav', 'Haze_26172' => 'cav', 'Hma1.2p1_0386F.1_g141790' => 'hma', 'HPP92_007933' => 'vpl', 'HPP92_007950' => 'vpl', 'HPP92_007951' => 'vpl', 'HPP92_019524' => 'vpl', 'Hund02026' => 'sun', 'Hund02027' => 'sun', 'Hund05839' => 'sun', 'Hund06196' => 'sun', 'Lalb_Chr07g0190661' => 'lal', 'Lalb_Chr07g0190671' => 'lal', 'Lalb_Chr12g0207601' => 'lal', 'Lj1A1137T82' => 'lonja', 'Lj1g0012267' => 'lja', 'Lj1g0021223' => 'lja', 'Lj2A357G78' => 'lonja', 'Lj3g0010186' => 'lja', 'Lsat_1_v5_gn_5_120581' => 'lsa', 'Lsat_1_v5_gn_6_55861' => 'lsa', 'Lsat_1_v5_gn_6_55920' => 'lsa', 'Lsat_1_v5_gn_7_91520' => 'lsa', 'Lsat_1_v5_gn_9_108101' => 'lsa', 'Manes.08G149100' => 'mes', 'Manes.09G142800' => 'mes', 'Mapoly0025s0099' => 'mpo', 'MBI11_g05457_MAGBIO' => 'mbi', 'MBI11_g05458_MAGBIO' => 'mbi', 'MCO16G423' => 'mco', 'MD03G1002100' => 'mdo', 'MD11G1002100' => 'mdo', 'MD12G1002700' => 'mdo', 'MD12G1176800' => 'mdo', 'MD14G1002000' => 'mdo', 'Medtr3g065900' => 'mtr', 'Medtr3g066070' => 'mtr', 'Medtr4g029010' => 'mtr', 'Medtr4g122610' => 'mtr', 'Medtr4g122635' => 'mtr', 'Medtr7g072580' => 'mtr', 'MELO3C015563.2' => 'cme', 'MSTRG.18035' => 'ama', 'MSTRG.20933' => 'ama', 'Nitab4.5_0000001g0040' => 'nta', 'Nitab4.5_0000911g0050' => 'nta', 'Nitab4.5_0002068g0060' => 'nta', 'Nn2g15884' => 'nnu', 'Nn7g35830' => 'nnu', 'Oeu022083.1' => 'oeu', 'Oeu023972.1' => 'oeu', 'Oeu060895.2' => 'oeu', 'Os03g0657000' => 'osa', 'Os12g0580300' => 'osa', 'Peaxi162Scf00076g01050' => 'pax', 'PGR119G0518' => 'pgr', 'PGR142G4380' => 'pgr', 'Phvul.001G076800' => 'pvu', 'Phvul.006G062900' => 'pvu', 'Phvul.010G081500' => 'pvu', 'Potri.013G059300' => 'ptr', 'Potri.019G033300' => 'ptr', 'Pp3c12_4720' => 'ppa', 'Pp3c4_16100' => 'ppa', 'PRCOL_00000348' => 'pco', 'Prupe.6G001900' => 'ppe', 'Prupe.7G002500' => 'ppe', 'Prupe.7G002800' => 'ppe', 'Psat0s1135g0040' => 'psa', 'Psat0s1135g0240' => 'psa', 'Psat2g055000' => 'psa', 'Psat3g121040' => 'psa', 'Psat5g121280' => 'psa', 'Psat7g230160' => 'psa', 'PSO170G4543' => 'pso', 'PSO339G0900' => 'pso', 'PSO339G4383' => 'pso', 'PSO339G5032' => 'pso', 'PSO384G4207' => 'pso', 'PSO478G4144' => 'pso', 'QL01p010469' => 'qlo', 'QL01p010488' => 'qlo', 'RcHm_v2.0_Chr3g0463861' => 'rch', 'RcHm_v2.0_Chr3g0497421' => 'rch', 'RcHm_v2.0_Chr5g0059361' => 'rch', 'RcHm_v2.0_Chr5g0083961' => 'rch', 'Rhsim04G0087100' => 'rsi', 'Rhsim13G0234100' => 'rsi', 'Sabra13G0052700' => 'sbr', 'SalBow2G3503' => 'sbo', 'SalBow6G3197' => 'sbo', 'SalBow6G5773' => 'sbo', 'Sc14g0001670' => 'sci', 'Sed0009576' => 'sed', 'Sed0023057' => 'sed', 'SEGI_36240' => 'sgi', 'SGA_v2.0_scaffold3G01690' => 'sas', 'SGA_v2.0_scaffold3G01709' => 'sas', 'SGA_v2.0_scaffold6G03327' => 'sas', 'SHI25601' => 'shi', 'SMO116G0412' => 'smo', 'SMO361G0654' => 'smo', 'Solyc01g028930.4' => 'sly', 'Solyc01g150102.1' => 'sly', 'Sopen01g003560' => 'spe', 'Sopen01g017150' => 'spe', 'Sp1g41130' => 'spa', 'Sp3g11650' => 'spa', 'Sp6g36230' => 'spa', 'TAR623G0107' => 'tar', 'TAR633G2813' => 'tar', 'THA.LOC104805745' => 'tha', 'THA.LOC104805757' => 'tha', 'THA.LOC104805761' => 'tha', 'THA.LOC104822696' => 'tha', 'Thecc.01G125100' => 'tca', 'Thecc.01G125200' => 'tca', 'Thecc.01G125400' => 'tca', 'Thecc.05G236100' => 'tca', 'Thecc.05G293200' => 'tca', 'Thhalv10011790m.g' => 'esa', 'Thhalv10021552m.g' => 'esa', 'Thhalv10022351m.g' => 'esa', 'TPR.G19738' => 'tpr', 'TWI09G0349' => 'twi', 'TWI09G1209' => 'twi', 'TWI34G0344' => 'twi', 'TWI53G0967' => 'twi', 'unitig_37.g13064' => 'ugi', 'vmacro04260' => 'vma', 'vmacro04269' => 'vma', 'vmacro09145' => 'vma', 'Zm00001eb002410' => 'zma', 'Zm00001eb052680' => 'zma', 'Zm00001eb218190' => 'zma', 'Zm00001eb220320' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D002140', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D002140' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D002140', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '313', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002140' ) ), 'genes' => array( 'A03p02790' => 'bna', 'A03p02810' => 'bna', 'A05p17440' => 'bna', 'A05p36090' => 'bna', 'A08p00600' => 'bna', 'A09p66520' => 'bna', 'Aa31LG10G730' => 'aar', 'Aa31LG8G660' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2864' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4395' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3164' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3347' => 'aag', 'Actinidia00913' => 'ach', 'Actinidia16231' => 'ach', 'Actinidia22092' => 'ach', 'Actinidia37353' => 'ach', 'Actinidia38617' => 'ach', 'Ah.01g006490' => 'amhyb', 'Ah.08g222790' => 'amhyb', 'AL1G63540' => 'aly', 'Aqoxy5G04361' => 'aox', 'Aqoxy7G00924' => 'aox', 'arahy.Tifrunner.gnm1.ann1.286I7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5NK5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P1DIDD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SM1QYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SQ84UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5KUV8' => 'arhy', 'AT1G55520' => 'ath', 'AT3G13445' => 'ath', 'ATR0580G369' => 'atr', 'ATR0749G036' => 'atr', 'ATR0752G012' => 'atr', 'ATR0827G027' => 'atr', 'ATR0827G165' => 'atr', 'Atru.chr11.919' => 'acertr', 'Atru.chr2.1343' => 'acertr', 'AUR62001610' => 'cqu', 'AUR62011411' => 'cqu', 'AUR62016648' => 'cqu', 'AUR62020170' => 'cqu', 'AUR62027761' => 'cqu', 'BcaB01g05997' => 'bca', 'BcaB02g10818' => 'bca', 'BcaB04g16953' => 'bca', 'BcaB05g21658' => 'bca', 'BcaB05g21659' => 'bca', 'BcaB07g33210' => 'bca', 'BcaC01g01531' => 'bca', 'BcaC05g28734' => 'bca', 'BcaC05g29179' => 'bca', 'BcaC07g42013' => 'bca', 'BcaC08g43629' => 'bca', 'BcaC08g44201' => 'bca', 'BcaNung06580' => 'bca', 'BolC2t06243H' => 'bol', 'BolC3t12866H' => 'bol', 'BolC3t21589H' => 'bol', 'BolC5t33572H' => 'bol', 'BolC5t34114H' => 'bol', 'BolC6t36124H' => 'bol', 'BolC6t36808H' => 'bol', 'BolC8t52597H' => 'bol', 'BraA02t04886Z' => 'bra', 'BraA03t09642Z' => 'bra', 'BraA03t09644Z' => 'bra', 'BraA05t20639Z' => 'bra', 'BraA05t22416Z' => 'bra', 'BraA08t32117Z' => 'bra', 'C02p02780' => 'bna', 'C03p03210' => 'bna', 'C03p92830' => 'bna', 'C05p54470' => 'bna', 'C06p10460' => 'bna', 'C06p16090' => 'bna', 'C08p50690' => 'bna', 'CAN.G245.1' => 'can', 'CAN.G282.67' => 'can', 'CANSAT21G0818' => 'cansat', 'CANSAT25G2162' => 'cansat', 'CARHR045200' => 'chi', 'CARHR088100' => 'chi', 'Carub.0001s4401' => 'cru', 'Carub.0003s1289' => 'cru', 'Ca_19770_v3' => 'car', 'Cc00_g08900' => 'ccan', 'Cc01_g00250' => 'ccan', 'Cc02_g02090' => 'ccan', 'CDE02G2982' => 'cde', 'CDE04G0346' => 'cde', 'CDE05G0267' => 'cde', 'CDE05G3016' => 'cde', 'CDE07G0215' => 'cde', 'CDE10G0940' => 'cde', 'Cfa009536' => 'cfa', 'Cfa009539' => 'cfa', 'Cfa009542' => 'cfa', 'Ciclev10033950m.g' => 'ccl', 'CiPaw.02G041800' => 'cil', 'CiPaw.05G071700' => 'cil', 'CiPaw.13G178600' => 'cil', 'ClCG03G012090' => 'cla', 'ClCG03G012100' => 'cla', 'ClCG03G014640' => 'cla', 'ClCG03G014650' => 'cla', 'COL.COLO4_00049' => 'col', 'COL.COLO4_13616' => 'col', 'COL.COLO4_14003' => 'col', 'COL.COLO4_33701' => 'col', 'COL.COLO4_34140' => 'col', 'COL.COLO4_35337' => 'col', 'Cpa.g.sc51.95' => 'cpa', 'Cre12.g505700' => 'cre', 'CsaV3_1G041520' => 'csa', 'CSS0013302' => 'camsi', 'DCAR_009248' => 'dca', 'DCAR_016867' => 'dca', 'Dinv13486' => 'din', 'Dinv37008' => 'din', 'Duzib106G0023' => 'dzi', 'Duzib106G0138' => 'dzi', 'Duzib106G0576' => 'dzi', 'Duzib106G1867' => 'dzi', 'Duzib128G0762' => 'dzi', 'Duzib160G0419' => 'dzi', 'Duzib177G0320' => 'dzi', 'Duzib177G0568' => 'dzi', 'ECA233G0802' => 'eca', 'ECA233G1438' => 'eca', 'ECA236G4430' => 'eca', 'ECA240G1881' => 'eca', 'EL10Ac7g16222' => 'bvu', 'EL10Ac9g21802' => 'bvu', 'Eucgr.K01483' => 'egr', 'FAN02G2560' => 'fan', 'FAN05G1025' => 'fan', 'FAN07G1359' => 'fan', 'FAN09G1843' => 'fan', 'FAN11G0913' => 'fan', 'FAN11G2433' => 'fan', 'FAN11G3828' => 'fan', 'FAN14G2253' => 'fan', 'FAN14G2542' => 'fan', 'FAN16G1873' => 'fan', 'FAN19G0703' => 'fan', 'FAN21G1264' => 'fan', 'FAN21G1962' => 'fan', 'FAN23G1243' => 'fan', 'FAN25G0154' => 'fan', 'FAN25G3655' => 'fan', 'FAN26G1633' => 'fan', 'FAN28G1683' => 'fan', 'FAN28G2179' => 'fan', 'FvH4_1g28010' => 'fve', 'FvH4_3g32401' => 'fve', 'FvH4_3g32403' => 'fve', 'FvH4_3g32450' => 'fve', 'FvH4_3g45850' => 'fve', 'FvH4_4g21060' => 'fve', 'FvH4_6g12030' => 'fve', 'Glyma.02G057100' => 'gma', 'Glyma.03G036800' => 'gma', 'Glyma.09G276900' => 'gma', 'Glyma.16G140200' => 'gma', 'Glyma.18G212300' => 'gma', 'Glyma.19G111200' => 'gma', 'Gohir.A08G213400' => 'ghi', 'Gohir.A11G258300' => 'ghi', 'Gohir.A13G171800' => 'ghi', 'Gohir.D08G230500' => 'ghi', 'Gohir.D11G268300' => 'ghi', 'Gohir.D13G177600' => 'ghi', 'Gorai.013G202900' => 'gra', 'GSVIVG01025497001' => 'vvi', 'HanXRQChr03g0069271' => 'han', 'HanXRQChr10g0304991' => 'han', 'HanXRQChr16g0505421' => 'han', 'Haze_22927' => 'cav', 'Haze_26172' => 'cav', 'Hma1.2p1_0386F.1_g141790' => 'hma', 'HPP92_007933' => 'vpl', 'HPP92_007950' => 'vpl', 'HPP92_007951' => 'vpl', 'HPP92_019524' => 'vpl', 'Hund02026' => 'sun', 'Hund02027' => 'sun', 'Hund05839' => 'sun', 'Hund06196' => 'sun', 'Lalb_Chr07g0190661' => 'lal', 'Lalb_Chr07g0190671' => 'lal', 'Lalb_Chr12g0207601' => 'lal', 'Lj1A1137T82' => 'lonja', 'Lj1g0012267' => 'lja', 'Lj1g0021223' => 'lja', 'Lj2A357G78' => 'lonja', 'Lj3g0010186' => 'lja', 'Lsat_1_v5_gn_5_120581' => 'lsa', 'Lsat_1_v5_gn_6_55861' => 'lsa', 'Lsat_1_v5_gn_6_55920' => 'lsa', 'Lsat_1_v5_gn_7_91520' => 'lsa', 'Lsat_1_v5_gn_9_108101' => 'lsa', 'Manes.08G149100' => 'mes', 'Manes.09G142800' => 'mes', 'Mapoly0025s0099' => 'mpo', 'MBI11_g05457_MAGBIO' => 'mbi', 'MBI11_g05458_MAGBIO' => 'mbi', 'MCO16G423' => 'mco', 'MD03G1002100' => 'mdo', 'MD11G1002100' => 'mdo', 'MD12G1002700' => 'mdo', 'MD12G1176800' => 'mdo', 'MD14G1002000' => 'mdo', 'Medtr3g065900' => 'mtr', 'Medtr3g066070' => 'mtr', 'Medtr4g029010' => 'mtr', 'Medtr4g122610' => 'mtr', 'Medtr4g122635' => 'mtr', 'Medtr7g072580' => 'mtr', 'MELO3C015563.2' => 'cme', 'MSTRG.18035' => 'ama', 'MSTRG.20933' => 'ama', 'Nitab4.5_0000001g0040' => 'nta', 'Nitab4.5_0000911g0050' => 'nta', 'Nitab4.5_0002068g0060' => 'nta', 'Nn2g15884' => 'nnu', 'Nn7g35830' => 'nnu', 'Oeu022083.1' => 'oeu', 'Oeu023972.1' => 'oeu', 'Oeu060895.2' => 'oeu', 'Os03g0657000' => 'osa', 'Os12g0580300' => 'osa', 'Peaxi162Scf00076g01050' => 'pax', 'PGR119G0518' => 'pgr', 'PGR142G4380' => 'pgr', 'Phvul.001G076800' => 'pvu', 'Phvul.006G062900' => 'pvu', 'Phvul.010G081500' => 'pvu', 'Potri.013G059300' => 'ptr', 'Potri.019G033300' => 'ptr', 'Pp3c12_4720' => 'ppa', 'Pp3c4_16100' => 'ppa', 'PRCOL_00000348' => 'pco', 'Prupe.6G001900' => 'ppe', 'Prupe.7G002500' => 'ppe', 'Prupe.7G002800' => 'ppe', 'Psat0s1135g0040' => 'psa', 'Psat0s1135g0240' => 'psa', 'Psat2g055000' => 'psa', 'Psat3g121040' => 'psa', 'Psat5g121280' => 'psa', 'Psat7g230160' => 'psa', 'PSO170G4543' => 'pso', 'PSO339G0900' => 'pso', 'PSO339G4383' => 'pso', 'PSO339G5032' => 'pso', 'PSO384G4207' => 'pso', 'PSO478G4144' => 'pso', 'QL01p010469' => 'qlo', 'QL01p010488' => 'qlo', 'RcHm_v2.0_Chr3g0463861' => 'rch', 'RcHm_v2.0_Chr3g0497421' => 'rch', 'RcHm_v2.0_Chr5g0059361' => 'rch', 'RcHm_v2.0_Chr5g0083961' => 'rch', 'Rhsim04G0087100' => 'rsi', 'Rhsim13G0234100' => 'rsi', 'Sabra13G0052700' => 'sbr', 'SalBow2G3503' => 'sbo', 'SalBow6G3197' => 'sbo', 'SalBow6G5773' => 'sbo', 'Sc14g0001670' => 'sci', 'Sed0009576' => 'sed', 'Sed0023057' => 'sed', 'SEGI_36240' => 'sgi', 'SGA_v2.0_scaffold3G01690' => 'sas', 'SGA_v2.0_scaffold3G01709' => 'sas', 'SGA_v2.0_scaffold6G03327' => 'sas', 'SHI25601' => 'shi', 'SMO116G0412' => 'smo', 'SMO361G0654' => 'smo', 'Solyc01g028930.4' => 'sly', 'Solyc01g150102.1' => 'sly', 'Sopen01g003560' => 'spe', 'Sopen01g017150' => 'spe', 'Sp1g41130' => 'spa', 'Sp3g11650' => 'spa', 'Sp6g36230' => 'spa', 'TAR623G0107' => 'tar', 'TAR633G2813' => 'tar', 'THA.LOC104805745' => 'tha', 'THA.LOC104805757' => 'tha', 'THA.LOC104805761' => 'tha', 'THA.LOC104822696' => 'tha', 'Thecc.01G125100' => 'tca', 'Thecc.01G125200' => 'tca', 'Thecc.01G125400' => 'tca', 'Thecc.05G236100' => 'tca', 'Thecc.05G293200' => 'tca', 'Thhalv10011790m.g' => 'esa', 'Thhalv10021552m.g' => 'esa', 'Thhalv10022351m.g' => 'esa', 'TPR.G19738' => 'tpr', 'TWI09G0349' => 'twi', 'TWI09G1209' => 'twi', 'TWI34G0344' => 'twi', 'TWI53G0967' => 'twi', 'unitig_37.g13064' => 'ugi', 'vmacro04260' => 'vma', 'vmacro04269' => 'vma', 'vmacro09145' => 'vma', 'Zm00001eb002410' => 'zma', 'Zm00001eb052680' => 'zma', 'Zm00001eb218190' => 'zma', 'Zm00001eb220320' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D002140' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D002140' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D002140' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002140' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151