Gene: Sopen01g001650
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen01g001650
- Transcript Identifier Sopen01g001650.1
- Gene Type Coding gene
- Location Spenn-ch01 : 589230-589988 : positive
Gene Family Information
- ID HOM05D001032
- #Genes/#Species 587/92
- Phylogenetic origin
- ID ORTHO05D000907
- #Genes/#Species 561/92
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Sopen01g001650.1
Descriptions
- Description encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family (RAP2.11). The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11. | related to AP2 11 (RAP2.11) | FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity | INVOLVED IN: regulation of transcription, DNA-dependent | LOCATED IN: nucleus | EXPRESSED IN: root hair, epidermis, primary root differentiation zone | CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type , Pathogenesis-related transcriptional factor/ERF, DNA-binding | BEST Arabidopsis thaliana protein match is: cytokinin response factor 4
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006355 | IEA | InterPro | regulation of transcription, DNA-templated | |
| GO:0000302 | ISO | PLAZA Integrative Orthology | response to reactive oxygen species | AT5G19790 |
| GO:0009723 | ISO | PLAZA Integrative Orthology | response to ethylene | AT5G19790 |
| GO:0048528 | ISO | PLAZA Integrative Orthology | post-embryonic root development | AT5G19790 |
| GO:0035865 | ISO | PLAZA Integrative Orthology | cellular response to potassium ion | AT5G19790 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003700 | IEA | InterPro | DNA-binding transcription factor activity | |
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0043565 | ISO | PLAZA Integrative Orthology | sequence-specific DNA binding | AT5G19790 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT5G19790 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |