Gene: Solyc12g076350.2

General Information

Structural Information

Species Solanum lycopersicum
Gene Identifier Solyc12g076350.2
Transcript Identifier Solyc12g076350.2.1
Gene Type Coding gene
Location SL4.0ch12 : 22834696-22836617 : positive

Gene Family Information

Homologous GF
Orthologous GF

ID HOM05D006209
#Genes/#Species 128/92
Phylogenetic origin

ID ORTHO05D007645
#Genes/#Species 128/93
Phylogenetic origin

Gene Duplication Information

Tandem Duplication Tandem duplicate

Labels

Identifiers

tid Solyc12g076350.2.1
uniprot A0A3Q7JC33
gene_id Solyc12g076350

Descriptions

Short descriptions
Ortholog descriptions

Description Pachytene checkpoint protein 2-like protein (AHRD V3.3 *-* A0A2G2Y8I8_CAPAN)

Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0051321	IEA	GOA Database	meiotic cell cycle
GO:0051598	IBA	GOA Database	meiotic recombination checkpoint signaling
GO:0007131	IBA	GOA Database	reciprocal meiotic recombination
GO:0051026	ISO	PLAZA Integrative Orthology	chiasma assembly	AT4G24710
GO:0007130	ISO	PLAZA Integrative Orthology	synaptonemal complex assembly	AT4G24710
GO:0007129	ISO	PLAZA Integrative Orthology	homologous chromosome pairing at meiosis	AT4G24710
GO:0042138	ISO	PLAZA Integrative Orthology	meiotic DNA double-strand break formation	Os04g0479000

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0000166	IEA	GOA Database	nucleotide binding
GO:0005524	IEA	GOA Database	ATP binding
GO:0016887	ISO	PLAZA Homology (enrichment)	ATP hydrolysis activity	HOM05D006209
GO:0005515	ISO	PLAZA Integrative Orthology	protein binding	Os04g0479000

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005694	IBA	GOA Database	chromosome
GO:0005634	IBA	GOA Database	nucleus
GO:0000795	ISO	PLAZA Integrative Orthology	synaptonemal complex	AT4G24710

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR044539	Pachytene checkpoint protein 2-like

Mapman id	Description
13.3.5.5.1.7	Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.class I interference-sensitive crossover pathway.pachytene checkpoint protein (PCH2/CRC1)