Gene: Solyc12g035650.2

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc12g035650.2
  • Transcript Identifier Solyc12g035650.2.1
  • Gene Type Coding gene
  • Location SL4.0ch12 : 42508873-42522592 : negative

Gene Family Information

  • ID HOM05D005952
  • #Genes/#Species 132/95
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc12g035650.2.1
  • uniprot A0A3Q7J866
  • gene_id Solyc12g035650

Descriptions

  • Description Nuclear pore complex protein NUP54 (AHRD V3.3 *** A0A1U8GNX0_CAPAN)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006999
IBA
GOA Databasenuclear pore organization
GO:0006607
IBA
GOA DatabaseNLS-bearing protein import into nucleus
GO:0036228
IBA
GOA Databaseprotein localization to nuclear inner membrane

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0017056
IBA
GOA Databasestructural constituent of nuclear pore
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G24310

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005643
IEA
GOA Databasenuclear pore
GO:0005643
IEA
InterPronuclear pore
GO:0005634
IEA
GOA Databasenucleus
GO:0044613
IBA
GOA Databasenuclear pore central transport channel
GO:0005635
ISO
PLAZA Integrative Orthologynuclear envelope AT1G24310
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT1G24310

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR025712 Nucleoporin Nup54, alpha-helical domain
IPR024864 Nucleoporin Nup54/Nup57/Nup44
Mapman id Description
23.5.1.1.6.4 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).central subcomplex.nucleoporin (NUP54)