Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g035650.2 Solanum lycopersicum HOM05D005952 ORTHO05D007262 3.1e-186 655.2 389 100.0
Sopen12g015910 Solanum pennellii HOM05D005952 ORTHO05D007262 3.1e-186 655.2 389 100.0
CAN.G34.9 Capsicum annuum HOM05D005952 ORTHO05D007262 4.1e-162 575.1 393 83.7
Nitab4.5_0000492g0130 Nicotiana tabacum HOM05D005952 ORTHO05D007262 1.3e-147 526.9 389 82.0
Peaxi162Scf00518g00512 Petunia axillaris HOM05D005952 ORTHO05D007262 1.7e-144 516.5 337 84.3
Nitab4.5_0002026g0100 Nicotiana tabacum HOM05D005952 ORTHO05D007262 1.2e-142 510.4 389 80.5
Prupe.1G228700 Prunus persica HOM05D005952 ORTHO05D007262 1.4e-138 496.9 335 81.2
MSTRG.7992 Avicennia marina HOM05D005952 ORTHO05D007262 1.2e-137 493.8 330 80.3
Gohir.D02G150400 Gossypium hirsutum HOM05D005952 ORTHO05D007262 7.8e-137 491.1 340 80.3
Gohir.A03G127000 Gossypium hirsutum HOM05D005952 ORTHO05D007262 2.3e-136 489.6 340 80.3
Cc00_g13550 Coffea canephora HOM05D005952 ORTHO05D007262 3.0e-136 489.2 338 79.3
Gorai.005G168700 Gossypium raimondii HOM05D005952 ORTHO05D007262 8.6e-136 487.6 340 80.0
TWI75G1563 Tripterygium wilfordii HOM05D005952 ORTHO05D007262 1.1e-135 487.3 333 79.3
Manes.13G018200 Manihot esculenta HOM05D005952 ORTHO05D007262 3.3e-135 485.7 334 79.6
PGR102G2583 Punica granatum HOM05D005952 ORTHO05D007262 4.3e-135 485.3 325 79.1
CSS0022532 Camellia sinensis var. sinensis HOM05D005952 ORTHO05D007262 1.1e-133 480.7 386 75.1
CSS0029993 Camellia sinensis var. sinensis HOM05D005952 ORTHO05D007262 1.1e-133 480.7 386 75.4
Nn3g16502 Nelumbo nucifera HOM05D005952 ORTHO05D007262 2.3e-133 479.6 332 78.9
QL03p053757 Quercus lobata HOM05D005952 ORTHO05D007262 5.2e-133 478.4 337 78.9
MD16G1117500 Malus domestica HOM05D005952 ORTHO05D007262 2.6e-132 476.1 326 79.4
ClCG11G013770 Citrullus lanatus HOM05D005952 ORTHO05D007262 5.8e-132 474.9 337 77.4
Dinv14825 Davidia involucrata HOM05D005952 ORTHO05D007262 1.3e-131 473.8 341 76.0
COL.COLO4_20379 Corchorus olitorius HOM05D005952 ORTHO05D007262 1.7e-131 473.4 367 73.0
Oeu036880.1 Olea europaea HOM05D005952 ORTHO05D007262 2.9e-131 472.6 365 73.4
Cfa009332 Carpinus fangiana HOM05D005952 ORTHO05D007262 3.7e-131 472.2 329 79.3
TAR622G0739 Trochodendron aralioides HOM05D005952 ORTHO05D007262 3.7e-131 472.2 337 77.4
CANSAT01G2967 Cannabis sativa HOM05D005952 ORTHO05D007262 6.4e-131 471.5 342 76.6
Lj3A1066G68 Lonicera japonica HOM05D005952 ORTHO05D007262 6.4e-131 471.5 397 76.1
MELO3C011875.2 Cucumis melo HOM05D005952 ORTHO05D007262 1.4e-130 470.3 337 76.6
CsaV3_5G030360 Cucumis sativus L. HOM05D005952 ORTHO05D007262 1.4e-130 470.3 335 76.1
CiPaw.06G101100 Carya illinoinensis HOM05D005952 ORTHO05D007262 4.1e-130 468.8 334 77.8
Duzib251G0036 Durio zibethinus HOM05D005952 ORTHO05D007262 7.1e-130 468.0 333 78.1
Migut.K00712 Erythranthe guttata HOM05D005952 ORTHO05D007262 1.2e-129 467.2 335 76.4
Thecc.02G212400 Theobroma cacao HOM05D005952 ORTHO05D007262 6.0e-129 464.9 342 76.3
HanXRQChr08g0207671 Helianthus annuus HOM05D005952 ORTHO05D007262 1.3e-128 463.8 335 76.1
Eucgr.B03481 Eucalyptus grandis HOM05D005952 ORTHO05D007262 3.9e-128 462.2 322 77.6
Lsat_1_v5_gn_8_149221 Lactuca sativa HOM05D005952 ORTHO05D007262 8.6e-128 461.1 336 78.3
arahy.Tifrunner.gnm1.ann1.19W7I6 Arachis hypogaea HOM05D005952 ORTHO05D007262 4.3e-127 458.8 335 75.8
Ciclev10031923m.g Citrus clementina HOM05D005952 ORTHO05D007262 5.6e-127 458.4 331 76.7
TWI36G0663 Tripterygium wilfordii HOM05D005952 ORTHO05D007262 8.1e-126 454.5 271 86.7
Cpa.g.sc43.12 Carica papaya HOM05D005952 ORTHO05D007262 1.1e-125 454.1 419 71.1
RcHm_v2.0_Chr4g0430621 Rosa chinensis HOM05D005952 ORTHO05D007262 1.1e-125 454.1 333 79.6
VMungo1383G3287 Vigna mungo HOM05D005952 ORTHO05D007262 1.8e-125 453.4 395 74.4
Actinidia20698 Actinidia chinensis HOM05D005952 ORTHO05D007262 4.0e-125 452.2 323 76.5
AUR62024128 Chenopodium quinoa HOM05D005952 ORTHO05D007262 5.2e-125 451.8 330 77.6
Sc04g0004640 Simmondsia chinensis HOM05D005952 ORTHO05D007262 5.2e-125 451.8 332 73.2
Potri.010G059100 Populus trichocarpa HOM05D005952 ORTHO05D007262 6.8e-125 451.4 330 75.8
Sabra10G0046500 Salix brachista HOM05D005952 ORTHO05D007262 8.9e-125 451.1 332 77.1
SGA_v2.0_scaffold9G04762 Striga asiatica HOM05D005952 ORTHO05D007262 5.8e-124 448.4 426 67.8
Atru.chr11.2304 Acer truncatum HOM05D005952 ORTHO05D007262 7.6e-124 448.0 339 75.8
Aqoxy5G03416 Aquilegia oxysepala HOM05D005952 ORTHO05D007262 1.3e-123 447.2 348 72.4
FAN07G2604 Fragaria x ananassa HOM05D005952 ORTHO05D007262 3.7e-123 445.7 387 75.2
FAN24G3446 Fragaria x ananassa HOM05D005952 ORTHO05D007262 3.7e-123 445.7 387 75.2
FAN07G2304 Fragaria x ananassa HOM05D005952 ORTHO05D007262 4.9e-123 445.3 332 77.1
C03p73530 Brassica napus HOM05D005952 ORTHO05D007262 1.1e-122 444.1 335 73.1
MD13G1116800 Malus domestica HOM05D005952 ORTHO05D007262 1.9e-122 443.4 262 88.5
EL10Ac6g13481 Beta vulgaris HOM05D005952 ORTHO05D007262 3.2e-122 442.6 332 75.3
FvH4_4g23970 Fragaria vesca HOM05D005952 ORTHO05D007262 3.2e-122 442.6 329 77.8
Phvul.001G260500 Phaseolus vulgaris HOM05D005952 ORTHO05D007262 7.1e-122 441.4 326 73.9
MBI11_g07451_MAGBIO Magnolia biondii HOM05D005952 ORTHO05D007262 9.2e-122 441.0 273 84.2
Lj1g0012703 Lotus japonicus HOM05D005952 ORTHO05D007262 3.5e-121 439.1 400 65.5
GSVIVG01010442001 Vitis vinifera HOM05D005952 ORTHO05D007262 3.5e-121 439.1 262 87.0
Glyma.11G249200 Glycine max HOM05D005952 ORTHO05D007262 6.0e-121 438.3 395 65.6
Haze_12392 Corylus avellana HOM05D005952 ORTHO05D007262 2.3e-120 436.4 348 71.8
THA.LOC104825515 Tarenaya hassleriana HOM05D005952 ORTHO05D007262 3.0e-120 436.0 332 72.9
Potri.008G176100 Populus trichocarpa HOM05D005952 ORTHO05D007262 6.6e-120 434.9 344 73.0
Hund06080 Selenicereus undatus HOM05D005952 ORTHO05D007262 8.6e-120 434.5 327 75.2
Ah.02g130720 Amaranthus hybridus HOM05D005952 ORTHO05D007262 1.9e-119 433.3 328 75.0
Glyma.18G008100 Glycine max HOM05D005952 ORTHO05D007262 2.5e-119 433.0 272 83.1
BcaC01g01637 Brassica carinata HOM05D005952 ORTHO05D007262 5.6e-119 431.8 339 71.7
A08p26510 Brassica napus HOM05D005952 ORTHO05D007262 9.6e-119 431.0 336 71.7
Lalb_Chr12g0206321 Lupinus albus HOM05D005952 ORTHO05D007262 1.2e-118 430.6 334 73.7
Medtr3g085590 Medicago truncatula HOM05D005952 ORTHO05D007262 1.2e-118 430.6 398 68.3
BolC3t19647H Brassica oleracea HOM05D005952 ORTHO05D007262 1.6e-118 430.3 339 71.4
BcaB03g12064 Brassica carinata HOM05D005952 ORTHO05D007262 2.1e-118 429.9 338 71.0
Sed0028059 Sechium edule HOM05D005952 ORTHO05D007262 2.1e-118 429.9 320 73.8
BraA08t34603Z Brassica rapa HOM05D005952 ORTHO05D007262 2.8e-118 429.5 338 71.6
CARHR026780 Cardamine hirsuta HOM05D005952 ORTHO05D007262 4.7e-118 428.7 336 72.0
Psat5g094800 Pisum sativum HOM05D005952 ORTHO05D007262 6.2e-118 428.3 398 69.3
Sp1g23460 Schrenkiella parvula HOM05D005952 ORTHO05D007262 1.4e-117 427.2 340 70.6
ECA233G5976 Erigeron canadensis HOM05D005952 ORTHO05D007262 4.0e-117 425.6 331 72.5
AT1G24310 Arabidopsis thaliana HOM05D005952 ORTHO05D007262 2.6e-116 422.9 332 70.2
FAN03G3372 Fragaria x ananassa HOM05D005952 ORTHO05D007262 4.4e-116 422.2 397 72.0
Rhsim12G0102200 Rhododendron simsii HOM05D005952 ORTHO05D007262 7.6e-116 421.4 425 61.9
AL1G40610 Arabidopsis lyrata HOM05D005952 ORTHO05D007262 2.2e-115 419.9 334 68.9
Sed0012291 Sechium edule HOM05D005952 ORTHO05D007262 3.5e-113 412.5 390 65.9
Carub.0001s2576 Capsella rubella HOM05D005952 ORTHO05D007262 6.0e-113 411.8 333 70.3
ATR0561G264 Amborella trichopoda HOM05D005952 ORTHO05D007262 3.0e-112 409.5 273 76.9
CDE02G4251 Ceratophyllum demersum HOM05D005952 ORTHO05D007262 4.3e-111 405.6 337 67.7
PSO063G3255 Papaver somniferum HOM05D005952 ORTHO05D007262 1.3e-110 404.1 327 70.3
Aa31LG7G9800 Aethionema arabicum HOM05D005952 ORTHO05D007262 1.6e-110 403.7 333 68.2
PSO782G2816 Papaver somniferum HOM05D005952 ORTHO05D007262 2.6e-108 396.4 330 69.1
AUR62005599 Chenopodium quinoa HOM05D005952 ORTHO05D007262 1.7e-107 393.7 296 76.4
Ca_16474_v3 Cicer arietinum L. HOM05D005952 ORTHO05D007262 7.1e-106 388.3 246 81.7
FAN27G1928 Fragaria x ananassa HOM05D005952 ORTHO05D007262 1.6e-105 387.1 386 67.9
DCAR_031192 Daucus carota HOM05D005952 ORTHO05D007262 1.0e-104 384.4 240 82.5
arahy.Tifrunner.gnm1.ann1.2251QZ Arachis hypogaea HOM05D005952 ORTHO05D007262 5.1e-104 382.1 335 66.6
FAN21G1414 Fragaria x ananassa HOM05D005952 ORTHO05D007262 3.3e-103 379.4 386 67.6
SalBow2G2019 Salvia bowleyana HOM05D005952 ORTHO05D007262 3.9e-96 355.9 361 62.0
Os07g0295400 Oryza sativa ssp. japonica HOM05D005952 ORTHO05D007262 1.9e-95 353.6 267 66.3
Zm00001eb305390 Zea mays HOM05D005952 ORTHO05D007262 6.2e-94 348.6 268 66.0
HPP92_023193 Vanilla planifolia HOM05D005952 ORTHO05D007262 8.1e-94 348.2 340 58.5
Mapoly0010s0010 Marchantia polymorpha HOM05D005952 ORTHO05D007262 1.4e-93 347.4 268 64.9
FAN04G2616 Fragaria x ananassa HOM05D005952 ORTHO05D007262 6.9e-93 345.1 227 82.4
SEGI_29251 Sequoiadendron giganteum HOM05D005952 ORTHO05D007262 1.7e-91 340.5 266 64.7
Pp3c10_15930 Physcomitrium patens HOM05D005952 ORTHO05D007262 3.5e-89 332.8 269 62.1
Pp3c10_15937 Physcomitrium patens HOM05D005952 ORTHO05D007262 3.5e-89 332.8 269 62.1
SHI17953 Sapria himalayana HOM05D005952 ORTHO05D007262 3.3e-87 326.2 295 62.0
Thhalv10008300m.g Eutrema salsugineum HOM05D005952 ORTHO05D007262 1.5e-84 317.4 249 69.9
CBR_g21943 Chara braunii HOM05D005952 ORTHO05D007262 7.1e-82 308.5 334 51.8
CDE06G2258 Ceratophyllum demersum HOM05D005952 ORTHO05D007262 3.5e-81 306.2 392 51.3
AagrBONN_evm.TU.Sc2ySwM_362.1552 Anthoceros agrestis HOM05D005952 ORTHO05D007262 2.3e-80 303.5 265 57.7
CBR_g39502 Chara braunii HOM05D005952 ORTHO05D007262 4.8e-78 295.8 331 51.1
Actinidia09658 Actinidia chinensis HOM05D005952 ORTHO05D007262 6.3e-78 295.4 340 54.7
TWI36G1659 Tripterygium wilfordii HOM05D005952 ORTHO05D007262 1.0e-75 288.1 342 54.4
Hma1.2p1_0668F.1_g200020 Hydrangea macrophylla HOM05D005952 ORTHO05D007262 1.4e-72 277.7 168 87.5
FAN04G0683 Fragaria x ananassa HOM05D005952 ORTHO05D007262 1.1e-71 274.6 273 70.7
AL6G39900 Arabidopsis lyrata HOM05D005075 ORTHO05D007097 9.1e-69 265.0 212 67.5
Pp3c14_14130 Physcomitrium patens HOM05D005952 ORTHO05D007262 1.6e-52 211.1 222 52.3
Hma1.2p1_0668F.1_g200040 Hydrangea macrophylla HOM05D005952 ORTHO05D007262 2.1e-49 200.7 250 58.0
FAN23G0106 Fragaria x ananassa HOM05D005952 ORTHO05D007262 3.4e-47 193.4 218 67.9
FAN04G0535 Fragaria x ananassa HOM05D005952 ORTHO05D007262 1.5e-31 141.4 112 75.0
HanXRQChr03g0071651 Helianthus annuus HOM05D005952 ORTHO05D007262 1.1e-26 125.2 93 67.7
SEGI_23869 Sequoiadendron giganteum HOM05D005952 ORTHO05D007262 1.9e-26 124.4 96 60.4
Migut.K01177 Erythranthe guttata HOM05D005952 ORTHO05D007262 1.7e-22 111.3 102 67.6
Cre12.g542950 Chlamydomonas reinhardtii HOM05D005952 ORTHO05D007262 2.3e-19 100.9 253 30.8
SEGI_30692 Sequoiadendron giganteum HOM05D005952 ORTHO05D007262 1.6e-17 94.7 113 43.4
MCO04G375 Micromonas commoda HOM05D005952 ORTHO05D007262 2.1e-17 94.4 333 24.9
Oeu029609.1 Olea europaea HOM05D005952 ORTHO05D007262 8.1e-17 92.4 62 67.7
BcaC03g16356 Brassica carinata HOM05D029489 ORTHO05D007262 9.9e-07 58.9 38 71.1


User provided reference genes

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