Gene: Solyc12g017675.2

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc12g017675.2
  • Transcript Identifier Solyc12g017675.2.1
  • Gene Type Coding gene
  • Location SL4.0ch12 : 7268295-7268862 : positive

Gene Family Information

  • ID HOM05D002722
  • #Genes/#Species 253/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc12g017675.2.1
  • uniprot A0A3Q7J609
  • gene_id Solyc12g017675

Descriptions

  • Description Ribosomal RNA small subunit methyltransferase NEP1 (AHRD V3.3 *-* A0A2G3BSL4_CAPCH)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0070475
IEA
GOA DatabaserRNA base methylation
GO:0070475
IEA
InterProrRNA base methylation
GO:0042254
IEA
GOA Databaseribosome biogenesis

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0070037
IEA
GOA DatabaserRNA (pseudouridine) methyltransferase activity
GO:0070037
IEA
InterProrRNA (pseudouridine) methyltransferase activity
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0019843
IEA
GOA DatabaserRNA binding

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR005304 Ribosomal biogenesis, methyltransferase, EMG1/NEP1
IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal
IPR029028 Alpha/beta knot methyltransferases
Mapman id Description
35.1 not assigned.annotated