Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g017675.2 Solanum lycopersicum HOM05D002722 ORTHO05D003076 1.2e-56 223.0 116 100.0
Solyc12g017630.2 Solanum lycopersicum HOM05D002722 ORTHO05D003076 3.5e-24 115.2 98 69.4
Sopen12g008390 Solanum pennellii HOM05D002722 ORTHO05D003076 3.5e-24 115.2 98 69.4
PGSC0003DMG400033615 Solanum tuberosum HOM05D002722 ORTHO05D003076 2.2e-23 112.5 98 67.3
Nitab4.5_0000125g0340 Nicotiana tabacum HOM05D002722 ORTHO05D003076 4.2e-22 108.2 96 66.7
Nitab4.5_0007985g0020 Nicotiana tabacum HOM05D002722 ORTHO05D003076 2.3e-20 102.4 96 62.5
Peaxi162Scf00105g01445 Petunia axillaris HOM05D002722 ORTHO05D003076 3.0e-20 102.1 98 64.3
CAN.G506.9 Capsicum annuum HOM05D002722 ORTHO05D003076 5.2e-20 101.3 97 62.9
Sopen12g008460 Solanum pennellii HOM05D002722 ORTHO05D003076 2.0e-19 99.4 100 62.0
Nitab4.5_0006579g0030 Nicotiana tabacum HOM05D002722 ORTHO05D003076 3.5e-16 88.6 98 58.2
Peaxi162Scf00013g01020 Petunia axillaris HOM05D002722 ORTHO05D003076 4.5e-16 88.2 84 65.5
Nitab4.5_0005444g0010 Nicotiana tabacum HOM05D002722 ORTHO05D003076 2.5e-14 82.4 44 86.4
Lalb_Chr02g0156541 Lupinus albus HOM05D002722 ORTHO05D003076 9.4e-14 80.5 50 72.0
CARHR167150 Cardamine hirsuta HOM05D002722 ORTHO05D003076 1.2e-13 80.1 45 75.6
Dinv34371 Davidia involucrata HOM05D002722 ORTHO05D003076 1.2e-13 80.1 98 49.0
Lj1A1097T43 Lonicera japonica HOM05D002722 ORTHO05D003076 1.2e-13 80.1 45 77.8
Lalb_Chr02g0156551 Lupinus albus HOM05D002722 ORTHO05D003076 1.2e-13 80.1 62 64.5
Lj1A1095T29 Lonicera japonica HOM05D002722 ORTHO05D003076 1.6e-13 79.7 92 53.3
THA.LOC104803263 Tarenaya hassleriana HOM05D002722 ORTHO05D003076 1.6e-13 79.7 45 75.6
DCAR_015349 Daucus carota HOM05D002722 ORTHO05D003076 2.1e-13 79.3 99 50.5
Nitab4.5_0005720g0010 Nicotiana tabacum HOM05D002722 ORTHO05D003076 2.7e-13 79.0 44 84.1
AT3G57000 Arabidopsis thaliana HOM05D002722 ORTHO05D003076 4.7e-13 78.2 45 73.3
PSO017G6910 Papaver somniferum HOM05D002722 ORTHO05D003076 6.1e-13 77.8 45 75.6
PSO478G3377 Papaver somniferum HOM05D002722 ORTHO05D003076 6.1e-13 77.8 45 75.6
AL5G38450 Arabidopsis lyrata HOM05D002722 ORTHO05D003076 1.0e-12 77.0 45 71.1
Lj1g0008464 Lotus japonicus HOM05D002722 ORTHO05D003076 1.0e-12 77.0 45 73.3
Lj6g0004170 Lotus japonicus HOM05D002722 ORTHO05D003076 1.0e-12 77.0 45 73.3
THA.LOC104824404 Tarenaya hassleriana HOM05D002722 ORTHO05D003076 1.0e-12 77.0 45 71.1
vmacro09026 Vaccinium macrocarpon HOM05D002722 ORTHO05D003076 1.4e-12 76.6 45 71.1
DCAR_013140 Daucus carota HOM05D002722 ORTHO05D003076 1.8e-12 76.3 97 49.5
Dinv09476 Davidia involucrata HOM05D002722 ORTHO05D003076 1.8e-12 76.3 45 71.1
Hma1.2p1_0004F.1_g003775 Hydrangea macrophylla HOM05D002722 ORTHO05D003076 1.8e-12 76.3 45 71.1
Hma1.2p1_2276F.1_g318640 Hydrangea macrophylla HOM05D002722 ORTHO05D003076 1.8e-12 76.3 45 71.1
Rhsim04G0110900 Rhododendron simsii HOM05D002722 ORTHO05D003076 1.8e-12 76.3 45 71.1
Sed0020900 Sechium edule HOM05D002722 ORTHO05D003076 1.8e-12 76.3 45 71.1
Actinidia38157 Actinidia chinensis HOM05D002722 ORTHO05D003076 2.3e-12 75.9 45 71.1
Glyma.11G099000 Glycine max HOM05D002722 ORTHO05D003076 2.3e-12 75.9 45 71.1
Glyma.12G025100 Glycine max HOM05D002722 ORTHO05D003076 2.3e-12 75.9 45 71.1
Medtr3g096190 Medicago truncatula HOM05D002722 ORTHO05D003076 2.3e-12 75.9 45 73.3
Phvul.011G027300 Phaseolus vulgaris HOM05D002722 ORTHO05D003076 2.3e-12 75.9 45 71.1
Aa31LG10G11900 Aethionema arabicum HOM05D002722 ORTHO05D003076 3.0e-12 75.5 45 68.9
Aa31LG10G12290 Aethionema arabicum HOM05D002722 ORTHO05D003076 3.0e-12 75.5 45 68.9
Aqoxy3G03846 Aquilegia oxysepala HOM05D002722 ORTHO05D003076 3.0e-12 75.5 45 71.1
ClCG10G016150 Citrullus lanatus HOM05D002722 ORTHO05D003076 3.0e-12 75.5 45 71.1
Lsat_1_v5_gn_6_79381 Lactuca sativa HOM05D002722 ORTHO05D003076 3.0e-12 75.5 49 65.3
Psat7g226520 Pisum sativum HOM05D002722 ORTHO05D003076 3.0e-12 75.5 45 68.9
CSS0045331 Camellia sinensis var. sinensis HOM05D002722 ORTHO05D003076 4.0e-12 75.1 45 68.9
Carub.0005s2374 Capsella rubella HOM05D002722 ORTHO05D003076 4.0e-12 75.1 45 68.9
Cpa.g.sc5.184 Carica papaya HOM05D002722 ORTHO05D003076 4.0e-12 75.1 45 68.9
CiPaw.09G046900 Carya illinoinensis HOM05D002722 ORTHO05D003076 4.0e-12 75.1 45 71.1
ECA246G4177 Erigeron canadensis HOM05D002722 ORTHO05D003076 4.0e-12 75.1 49 65.3
Eucgr.A02611 Eucalyptus grandis HOM05D002722 ORTHO05D003076 4.0e-12 75.1 98 42.9
MBI10_g18308_MAGBIO Magnolia biondii HOM05D002722 ORTHO05D003076 4.0e-12 75.1 45 73.3
QL07p009818 Quercus lobata HOM05D002722 ORTHO05D003076 4.0e-12 75.1 61 59.0
QL08p033654 Quercus lobata HOM05D002722 ORTHO05D003076 4.0e-12 75.1 45 73.3
Sed0027858 Sechium edule HOM05D002722 ORTHO05D003076 4.0e-12 75.1 45 71.1
arahy.Tifrunner.gnm1.ann1.S7ZPK3 Arachis hypogaea HOM05D002722 ORTHO05D003076 5.2e-12 74.7 45 71.1
arahy.Tifrunner.gnm1.ann1.ZN92QR Arachis hypogaea HOM05D002722 ORTHO05D003076 5.2e-12 74.7 45 71.1
BcaB02g07626 Brassica carinata HOM05D002722 ORTHO05D003076 5.2e-12 74.7 45 68.9
Cc06_g19070 Coffea canephora HOM05D002722 ORTHO05D003076 5.2e-12 74.7 45 71.1
MELO3C009764.2 Cucumis melo HOM05D002722 ORTHO05D003076 5.2e-12 74.7 45 71.1
CsaV3_3G040270 Cucumis sativus L. HOM05D002722 ORTHO05D003076 5.2e-12 74.7 45 71.1
HanXRQChr13g0414121 Helianthus annuus HOM05D002722 ORTHO05D003076 5.2e-12 74.7 49 63.3
Nitab4.5_0007571g0010 Nicotiana tabacum HOM05D002722 ORTHO05D003076 5.2e-12 74.7 39 84.6
CDE06G1766 Ceratophyllum demersum HOM05D002722 ORTHO05D003076 6.8e-12 74.3 45 68.9
Duzib128G1110 Durio zibethinus HOM05D002722 ORTHO05D003076 6.8e-12 74.3 46 65.2
Medtr4g032390 Medicago truncatula HOM05D002722 ORTHO05D003076 6.8e-12 74.3 45 71.1
Actinidia17690 Actinidia chinensis HOM05D002722 ORTHO05D003076 8.8e-12 73.9 45 68.9
Gohir.A12G115000 Gossypium hirsutum HOM05D002722 ORTHO05D003076 8.8e-12 73.9 45 66.7
Prupe.7G040700 Prunus persica HOM05D002722 ORTHO05D003076 8.8e-12 73.9 61 59.0
PGR142G2871 Punica granatum HOM05D002722 ORTHO05D003076 8.8e-12 73.9 45 66.7
VMungo1127G1646 Vigna mungo HOM05D002722 ORTHO05D003076 8.8e-12 73.9 45 68.9
Ciclev10005540m.g Citrus clementina HOM05D002722 ORTHO05D003076 1.2e-11 73.6 45 64.4
Thecc.05G137600 Theobroma cacao HOM05D002722 ORTHO05D003076 1.2e-11 73.6 45 66.7
TWI53G0099 Tripterygium wilfordii HOM05D002722 ORTHO05D003076 1.2e-11 73.6 45 66.7
TWI77G0285 Tripterygium wilfordii HOM05D002722 ORTHO05D003076 1.2e-11 73.6 45 66.7
TAR622G0121 Trochodendron aralioides HOM05D002722 ORTHO05D003076 1.2e-11 73.6 45 66.7
Nn3g17659 Nelumbo nucifera HOM05D002722 ORTHO05D003076 1.5e-11 73.2 45 66.7
CDE04G2576 Ceratophyllum demersum HOM05D002722 ORTHO05D003076 2.0e-11 72.8 45 66.7
Gohir.D12G118500 Gossypium hirsutum HOM05D002722 ORTHO05D003076 2.0e-11 72.8 45 64.4
Gorai.008G128200 Gossypium raimondii HOM05D002722 ORTHO05D003076 2.0e-11 72.8 45 64.4
QL05p018587 Quercus lobata HOM05D002722 ORTHO05D003076 2.0e-11 72.8 45 68.9
QL93p1866_0204 Quercus lobata HOM05D002722 ORTHO05D003076 2.0e-11 72.8 45 68.9
CANSAT64G0594 Cannabis sativa HOM05D002722 ORTHO05D003076 2.6e-11 72.4 45 71.1
MD14G1085000 Malus domestica HOM05D002722 ORTHO05D003076 2.6e-11 72.4 45 71.1
Manes.08G059000 Manihot esculenta HOM05D002722 ORTHO05D003076 2.6e-11 72.4 45 64.4
SalBow5G1745 Salvia bowleyana HOM05D002722 ORTHO05D003076 2.6e-11 72.4 45 73.3
Hund19102 Selenicereus undatus HOM05D002722 ORTHO05D003076 2.6e-11 72.4 45 64.4
Sc19g0008230 Simmondsia chinensis HOM05D002722 ORTHO05D003076 2.6e-11 72.4 99 44.4
SGA_v2.0_scaffold94G28531 Striga asiatica HOM05D002722 ORTHO05D003076 3.4e-11 72.0 45 73.3
Atru.chr6.2789 Acer truncatum HOM05D002722 ORTHO05D003076 4.4e-11 71.6 61 55.7
MSTRG.23859 Avicennia marina HOM05D002722 ORTHO05D003076 4.4e-11 71.6 45 73.3
BcaC07g40020 Brassica carinata HOM05D002722 ORTHO05D003076 4.4e-11 71.6 45 66.7
BcaC07g40087 Brassica carinata HOM05D002722 ORTHO05D003076 4.4e-11 71.6 45 66.7
A09p49930 Brassica napus HOM05D002722 ORTHO05D003076 4.4e-11 71.6 45 66.7
C08p32330 Brassica napus HOM05D002722 ORTHO05D003076 4.4e-11 71.6 45 66.7
BolC8t50847H Brassica oleracea HOM05D002722 ORTHO05D003076 4.4e-11 71.6 45 66.7
Duzib093G1218 Durio zibethinus HOM05D002722 ORTHO05D003076 5.7e-11 71.2 45 62.2
CSS0008082 Camellia sinensis var. sinensis HOM05D002722 ORTHO05D003076 7.5e-11 70.9 45 71.1
AUR62003734 Chenopodium quinoa HOM05D002722 ORTHO05D003076 7.5e-11 70.9 45 64.4
BraA09t40444Z Brassica rapa HOM05D002722 ORTHO05D003076 9.8e-11 70.5 45 64.4
Sabra16G0039200 Salix brachista HOM05D002722 ORTHO05D003076 9.8e-11 70.5 46 60.9
Sabra16G0044400 Salix brachista HOM05D002722 ORTHO05D003076 9.8e-11 70.5 46 60.9
Sp5g05580 Schrenkiella parvula HOM05D002722 ORTHO05D003076 9.8e-11 70.5 90 42.2
Eucgr.A00197 Eucalyptus grandis HOM05D002722 ORTHO05D003076 1.3e-10 70.1 98 40.8
SGA_v2.0_scaffold273G46400 Striga asiatica HOM05D002722 ORTHO05D003076 1.3e-10 70.1 45 68.9
GSVIVG01033616001 Vitis vinifera HOM05D002722 ORTHO05D003076 1.3e-10 70.1 45 64.4
Ca_04642_v3 Cicer arietinum L. HOM05D002722 ORTHO05D003076 1.7e-10 69.7 45 68.9
Sabra16G0039500 Salix brachista HOM05D002722 ORTHO05D003076 2.2e-10 69.3 45 60.0
TPR.G22980 Trifolium pratense HOM05D002722 ORTHO05D003076 2.2e-10 69.3 45 64.4
Ca_12664_v3 Cicer arietinum L. HOM05D002722 ORTHO05D003076 2.8e-10 68.9 45 66.7
Potri.016G037500 Populus trichocarpa HOM05D002722 ORTHO05D003076 2.8e-10 68.9 45 60.0
Sabra16G0022400 Salix brachista HOM05D002722 ORTHO05D003076 2.8e-10 68.9 45 60.0
Sabra16G0029700 Salix brachista HOM05D002722 ORTHO05D003076 2.8e-10 68.9 45 60.0
COL.COLO4_35076 Corchorus olitorius HOM05D002722 ORTHO05D003076 3.7e-10 68.6 101 45.5
HanXRQChr03g0084251 Helianthus annuus HOM05D002722 ORTHO05D003076 3.7e-10 68.6 101 41.6
Potri.006G040600 Populus trichocarpa HOM05D002722 ORTHO05D003076 3.7e-10 68.6 45 60.0
GSVIVG01027320001 Vitis vinifera HOM05D002722 ORTHO05D003076 3.7e-10 68.6 45 62.2
Gohir.D12G108700 Gossypium hirsutum HOM05D002722 ORTHO05D003076 6.3e-10 67.8 97 43.3
BcaC04g18585 Brassica carinata HOM05D000493 ORTHO05D003076 8.3e-10 67.4 46 63.0
Oeu059335.1 Olea europaea HOM05D002722 ORTHO05D003076 8.3e-10 67.4 45 66.7
Thecc.07G138100 Theobroma cacao HOM05D002722 ORTHO05D003076 8.3e-10 67.4 100 44.0
AUR62022315 Chenopodium quinoa HOM05D002722 ORTHO05D003076 1.1e-09 67.0 101 39.6
Migut.D02225 Erythranthe guttata HOM05D002722 ORTHO05D003076 1.1e-09 67.0 45 64.4
Os02g0290400 Oryza sativa ssp. japonica HOM05D002722 ORTHO05D003076 1.1e-09 67.0 45 60.0
RcHm_v2.0_Chr1g0324931 Rosa chinensis HOM05D002722 ORTHO05D003076 1.4e-09 66.6 45 66.7
AUR62014167 Chenopodium quinoa HOM05D002722 ORTHO05D003076 1.8e-09 66.2 99 40.4
Gorai.008G117700 Gossypium raimondii HOM05D002722 ORTHO05D003076 1.8e-09 66.2 97 42.3
SMO347G0033 Selaginella moellendorffii HOM05D002722 ORTHO05D003076 1.8e-09 66.2 46 63.0
CSS0013149 Camellia sinensis var. sinensis HOM05D002722 ORTHO05D003076 2.4e-09 65.9 45 66.7
Pp3c24_11670 Physcomitrium patens HOM05D002722 ORTHO05D003076 2.4e-09 65.9 45 60.0
PGSC0003DMG400028775 Solanum tuberosum HOM05D002722 ORTHO05D003076 2.4e-09 65.9 32 90.6
HPP92_003789 Vanilla planifolia HOM05D002722 ORTHO05D003076 2.4e-09 65.9 45 62.2
ATR1098G114 Amborella trichopoda HOM05D002722 ORTHO05D003076 3.1e-09 65.5 45 60.0
EL10As8g23871 Beta vulgaris HOM05D002722 ORTHO05D003076 4.1e-09 65.1 101 38.6
AUR62023903 Chenopodium quinoa HOM05D002722 ORTHO05D003076 5.4e-09 64.7 99 39.4
FvH4_7g03130 Fragaria vesca HOM05D002722 ORTHO05D003076 5.4e-09 64.7 45 64.4
FAN03G1329 Fragaria x ananassa HOM05D002722 ORTHO05D003076 5.4e-09 64.7 45 64.4
FAN06G2456 Fragaria x ananassa HOM05D002722 ORTHO05D003076 5.4e-09 64.7 45 64.4
FAN10G3784 Fragaria x ananassa HOM05D002722 ORTHO05D003076 5.4e-09 64.7 45 64.4
TPR.G8394 Trifolium pratense HOM05D002722 ORTHO05D003076 5.4e-09 64.7 45 64.4
unitig_37.g12701 Utricularia gibba HOM05D002722 ORTHO05D003076 5.4e-09 64.7 99 43.4
CSS0007850 Camellia sinensis var. sinensis HOM05D002722 ORTHO05D003076 7.0e-09 64.3 47 61.7
CSS0033813 Camellia sinensis var. sinensis HOM05D002722 ORTHO05D003076 7.0e-09 64.3 46 63.0
AUR62022313 Chenopodium quinoa HOM05D002722 ORTHO05D003076 7.0e-09 64.3 97 42.3
AUR62022312 Chenopodium quinoa HOM05D002722 ORTHO05D003076 9.1e-09 63.9 101 38.6
Sed0027850 Sechium edule HOM05D002722 ORTHO05D003076 1.2e-08 63.5 49 57.1
Mapoly0014s0080 Marchantia polymorpha HOM05D002722 ORTHO05D003076 1.6e-08 63.2 45 60.0
Gorai.008G095800 Gossypium raimondii HOM05D002722 ORTHO05D003076 2.0e-08 62.8 56 51.8
CAN.G1289.7 Capsicum annuum HOM05D002722 ORTHO05D003076 2.7e-08 62.4 33 84.8
arahy.Tifrunner.gnm1.ann1.FV4B32 Arachis hypogaea HOM05D002722 ORTHO05D003076 4.5e-08 61.6 47 53.2
arahy.Tifrunner.gnm1.ann1.PL1MYW Arachis hypogaea HOM05D002722 ORTHO05D003076 4.5e-08 61.6 47 53.2
CBR_g21861 Chara braunii HOM05D002722 ORTHO05D003076 4.5e-08 61.6 50 56.0
AUR62026605 Chenopodium quinoa HOM05D002722 ORTHO05D003076 4.5e-08 61.6 98 38.8
SalBow8G4805 Salvia bowleyana HOM05D002722 ORTHO05D003076 4.5e-08 61.6 96 41.7
Gohir.A12G087250 Gossypium hirsutum HOM05D002722 ORTHO05D003076 5.9e-08 61.2 45 53.3
BcaC03g13660 Brassica carinata HOM05D002722 ORTHO05D003076 1.0e-07 60.5 44 61.4
Cc05_g02110 Coffea canephora HOM05D002722 ORTHO05D003076 1.0e-07 60.5 46 54.3
Cc05_g02870 Coffea canephora HOM05D002722 ORTHO05D003076 1.0e-07 60.5 46 54.3
AagrBONN_evm.TU.Sc2ySwM_368.2134 Anthoceros agrestis HOM05D002722 ORTHO05D003076 1.7e-07 59.7 45 53.3
arahy.Tifrunner.gnm1.ann1.00JXB8 Arachis hypogaea HOM05D002722 ORTHO05D003076 1.7e-07 59.7 47 51.1
MCO01G479 Micromonas commoda HOM05D002722 ORTHO05D003076 1.7e-07 59.7 45 48.9
PRCOL_00005011 Prasinoderma coloniale HOM05D002722 ORTHO05D003076 1.7e-07 59.7 45 57.8
arahy.Tifrunner.gnm1.ann1.9G542N Arachis hypogaea HOM05D002722 ORTHO05D003076 3.8e-07 58.5 47 48.9
Cpa.g.sc1212.2 Carica papaya HOM05D002722 ORTHO05D003076 3.8e-07 58.5 35 68.6
Cfa020075 Carpinus fangiana HOM05D002722 ORTHO05D003076 3.8e-07 58.5 32 71.9
Haze_05926 Corylus avellana HOM05D002722 ORTHO05D003076 3.8e-07 58.5 32 71.9
Hund00512 Selenicereus undatus HOM05D002722 ORTHO05D003076 3.8e-07 58.5 45 53.3
Aqoxy6G02147 Aquilegia oxysepala HOM05D002722 ORTHO05D003076 6.6e-07 57.8 46 54.3
CANSAT54G0215 Cannabis sativa HOM05D002722 ORTHO05D003076 6.6e-07 57.8 63 52.4
CANSAT80G1025 Cannabis sativa HOM05D002722 ORTHO05D003076 8.6e-07 57.4 45 57.8
Cre01.g009950 Chlamydomonas reinhardtii HOM05D002722 ORTHO05D003076 8.6e-07 57.4 49 49.0
EL10Ac5g11207 Beta vulgaris HOM05D002722 ORTHO05D003076 1.5e-06 56.6 45 53.3
Gorai.008G249100 Gossypium raimondii HOM05D002722 ORTHO05D003076 1.5e-06 56.6 33 66.7
Oeu029503.1 Olea europaea HOM05D002722 ORTHO05D003076 2.5e-06 55.8 74 41.9
Rhsim02G0223300 Rhododendron simsii HOM05D002722 ORTHO05D003076 2.5e-06 55.8 45 51.1
Rhsim09G0083600 Rhododendron simsii HOM05D002722 ORTHO05D003076 3.3e-06 55.5 45 51.1
Rhsim09G0125200 Rhododendron simsii HOM05D002722 ORTHO05D003076 3.3e-06 55.5 45 51.1
SalBow8G2070 Salvia bowleyana HOM05D002722 ORTHO05D003076 3.3e-06 55.5 96 40.6
AUR62021036 Chenopodium quinoa HOM05D002722 ORTHO05D003076 4.2e-06 55.1 45 51.1


User provided reference genes

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