Gene: Solyc11g020820.2

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc11g020820.2
  • Transcript Identifier Solyc11g020820.2.1
  • Gene Type Coding gene
  • Location SL4.0ch11 : 12288017-12295424 : negative

Gene Family Information

  • ID HOM05D003534
  • #Genes/#Species 193/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc11g020820.2.1
  • uniprot A0A3Q7IU41
  • gene_id Solyc11g020820

Descriptions

  • Description AdoMet-dependent rRNA methyltransferase SPB1 (AHRD V3.3 *** A0A2C5X518_9PEZI)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0001510
IBA
IEA
GOA DatabaseRNA methylation
GO:0000466
IBA
GOA Databasematuration of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463
IBA
GOA Databasematuration of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0031167
IBA
IEA
GOA DatabaserRNA methylation
GO:0032259
IEA
GOA Databasemethylation
GO:0032259
IEA
InterPromethylation
GO:0042254
IEA
GOA Databaseribosome biogenesis
GO:0006364
IEA
GOA DatabaserRNA processing
GO:0006364
IEA
InterProrRNA processing
GO:0000453
IEA
GOA Databaseenzyme-directed rRNA 2'-O-methylation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008168
IEA
GOA Databasemethyltransferase activity
GO:0008168
IEA
InterPromethyltransferase activity
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT4G25730
GO:0008173
IBA
GOA DatabaseRNA methyltransferase activity
GO:0008650
IBA
GOA DatabaserRNA (uridine-2'-O-)-methyltransferase activity
GO:0016435
IBA
GOA DatabaserRNA (guanine) methyltransferase activity
GO:0016740
IEA
GOA Databasetransferase activity
GO:0008649
IEA
GOA DatabaserRNA methyltransferase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005730
IBA
IEA
GOA Databasenucleolus
GO:0030687
IBA
GOA Databasepreribosome, large subunit precursor
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IEA
InterPronucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR024576 Ribosomal RNA methyltransferase Spb1, domain of unknown function DUF3381
IPR002877 Ribosomal RNA methyltransferase FtsJ domain
IPR012920 Ribosomal RNA methyltransferase, Spb1, C-terminal
IPR029063 S-adenosyl-L-methionine-dependent methyltransferase
Mapman id Description
35.1 not assigned.annotated